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Chromatin fatigue: DNA repair alters the chromatin environment and introduces heritable variation in gene expression in a larger region around the lesion! Amazing achievement by @sbantele.bsky.social and Jiri Lukas published in @science.org ๐Ÿ™Œ Happy we could contribute. See ๐Ÿ‘‡
Learn about the #DNAdamage response in #CellPhysiology and diseases in the eponymous EMBO Workshop in #Sounio, #Greece, 12โ€“16 October 2026. Deadline: 17 May 2026 https://meetings.embo.org/event/26-dna-damage #EMBODNADamageResponse #genesky #LifeSciences #research #meeting #EMBOevents ๐Ÿงช
7mo
1mo
๐Ÿ“– The final version of our paper is out in press Cohesin cofactor dosage sets the rate of loop extrusion, rendering genome folding tunable yet vulnerable to genetic disruption authors.elsevier.com/a/1m%7EU03vV... or www.cell.com/molecular-ce...
Registration open. Top-notch lineup of speakers from Europe, the US and beyond, covering chromatin biology, genome maintenance, cancer plasticity and evolution, and metabolism www.atoutcom.com/cancer-epige...
๐Ÿ“ข Don't miss @groth-anja.bsky.social from the Danish Cancer Institute, who will present her research at the #Embryo2026 ๐Ÿงฌ "How cells copy their epigenome" Register until Oct 31! ๐Ÿ‘‡ www.molgen.mpg.de/embryo2026 Supported by the Weizmann Institute of Science
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Join us for the 3rd EMBO:EMBL Symposium on 'DNA replication and Genome Maintenance - from basic biology to human health' @embl.org Heidelberg, Oct 20-23 2026. Fantastic speaker lineup ๐Ÿคฉ on chromosome replication, stability and organization ๐Ÿ‘‰ abstract by July 28: s.embl.org/ees26-13-li
๐ŸงชMove over CUT&Tag, thereโ€™s a new #TranscriptionFactor mapping method in town. Our newly developed DynaTag is faster, cleaner, more sensitive than #ChIPseq, #CUT&RUN and #CUT&Tag. ๐Ÿ”— Our @natcomms.nature.com paper: www.nature.com/articles/s41... ๐ŸงตLetโ€™s break down what makes DynaTag so powerful (1/7)
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EMBO
s.embl.org
DNA replication and genome maintenance: from basic biology to human health
Shah, Tortora, et al. show that cells can dial the rate of cohesin loop extrusion by balancing the relative dosage of NIPBL and PDS5. Their models provide a quantitative mechanistic basis for the gene...
www.cell.com
Cohesin cofactor dosage sets the rate of loop extrusion, rendering genome folding tunable yet vulnerable to genetic disruption
Anja Groth
Yadav, Jadhav, @hanasedlackova.bsky.social et al present a novel cell-permeable biotin-HaloTag ligand. The reported ligand expands the HaloTag toolbox by enabling in vivo labeling & providing capabilities for efficient affinity capture of protein variants from live cells rupress.org/jcb/article/...
Anja Groth
11mo
Scaffidi Lab
This is really bad. The ERC is the lifeline of many labs. The letter from the ERC says โ€œthe only way is to reduce applicationsโ€ No! It's the wrong direction. Use AI to assist review. Itโ€™s not perfect, but it allows more proposals to be evaluated, and it should support, not replace, human reviewers.
Max Planck Institute for Molecular Genetics
2mo
Robert Hรคnsel-Hertsch
3mo
Elphege Nora Lab at UCSF
DNA replication globally disrupts the epigenome. But does this create a chromatin-access opportunity for TF binding to facilitate cell identity change? Now ๐ซ๐ž๐ฉ๐ฅ๐ข-๐€๐“๐€๐‚-๐ฌ๐ž๐ช shows ๐˜ฅ๐˜ฆ ๐˜ฏ๐˜ฐ๐˜ท๐˜ฐ chromatin opening & TF binding occurs specifically post-replication, in cellular differentiation & reprogramming!
Knudsen and colleagues use repli-ATAC-seq to compare replicated and unreplicated chromatin in two models of cell identity change. They find that lineage-specific elements are accessible earlier in rep...
Post-replicative chromatin accessibility predicts cell fate change
www.cell.com
๐—–๐—ฎ๐—ป ๐—ฐ๐—ฒ๐—น๐—น๐˜€ ๐—ฒ๐˜ƒ๐—ฒ๐—ฟ ๐˜๐—ฟ๐˜‚๐—น๐˜† ๐—ฟ๐—ฒ๐—ฐ๐—ผ๐˜ƒ๐—ฒ๐—ฟ ๐—ณ๐—ฟ๐—ผ๐—บ ๐——๐—ก๐—” ๐—ฑ๐—ฎ๐—บ๐—ฎ๐—ด๐—ฒ?Excited to share our new study โ€œRepair of DNA double-strand breaks leaves heritable impairment to genome functionโ€, revealing DNA repairโ€™s hidden cost, out now @science.org tinyurl.com/5n6zw3ye. Led by @sbantele.bsky.social and Jiri Lukas.๐Ÿงต๐Ÿ‘‡1/n
Journal of Cell Biology
7mo
Upon DNA breakage, a genomic locus undergoes alterations in three-dimensional chromatin architecture to facilitate signaling and repair. Although cells possess mechanisms to repair damaged DNA, it is ...
tinyurl.com
Repair of DNA double-strand breaks leaves heritable impairment to genome function
10mo
New preprint with @gfudenberg.bsky.social We find the rate of cohesin loop extrusion in cells is set by NIPBL dosage and tunes many aspects of chromosome folding. This provides a molecular basis for NIPBL haploinsufficiency in humans. ๐Ÿงต๐Ÿ‘‡ www.biorxiv.org/content/10.1...
Cohesin loop extrusion is a major driver of chromosome folding, but how its dynamics are controlled to shape the genome remains elusive. Here we disentangle the contributions of the cohesin cofactors ...
www.biorxiv.org
NIPBL dosage shapes genome folding by tuning the rate of cohesin loop extrusion
Oded Rechavi
Elphege Nora Lab at UCSF
Susi Bantele
The Groth lab
I donโ€™t know if you saw the MASSIVE news announced by @erc.europa.eu today: from now on, if you get a B at step 1 you are eligible to apply at N+3(!!!) years. Say you got a B in STG2026 step 1, you thought you could apply in STG2028, but no: only in STG2029! erc.europa.eu/news-events/...
2mo
The ERC plans to launch the grant competitions under its 2027 Work Programme between July 2026 and June 2027, with the calls for proposals introducing several changes to the eligibility rules for appl...
erc.europa.eu
Applying for an ERC grant in the 2027 competitions: what you need to know
Dr Ino Agrafioti