The new OrthoFinder paper is out now!
In this new work, we introduce major advances in accuracy and scalability, allowing analysis on much larger datasets
www.nature.com/articles/s41...
github.com/OrthoFinder/...
The updated OrthoFinder v3 software boosts accuracy and scalability in phylogenetic orthology inference with massive and diverse datasets.
How predictable is evolution? Replicated C. elegans experiments show environmental differences and population bottlenecks jointly shape the repeatability of adaptation doi.org/10.1093/evle... Image credit: Wikimedia
How do alternative reproductive modes arise?
In this @pnas.org paper, we show that hybridogenesis -where a haploid set of chromosomes is transmitted clonally across generations- acted as an intermediate step between sexual and asexual reproduction in stick insects.
doi.org/10.1073/pnas...
Video
Evolution Letters
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
Brault et al. propose guidelines for standardized π estimation, systematic reporting of summary statistics, and the adoption of richer metadata to ensure that population genomic data remain comparable and reusable across a wide range of systems.
🔗 doi.org/10.1093/gbe/...
#genome #evolution
😀
Actually, what is a gain-of-function mutation?
doi.org/10.1093/gene...
🧨 New publication out (I think this one is 🌶️ ):
Cerca & @stelkens.bsky.social - "The identity crisis of speciation genomics".
academic.oup.com/evolinnean/a...
Our paper unpacking "fitness" is out doi.org/10.1093/gene.... How to define fitness depends on what question you ask. Selection acts on organismal vital rates, longer-term outcomes make sense for genetic lineages, models link them. "Invasion fitness" = speed, but sometimes probability matters more.
Why are leaves the shape that they are? What controls intraspecific, genetic variation in leaf shape?
New from my lab, in collaboration with many others, led by PhD student Amanda Peake: mapping the leaf shape polymorphism in Ipomoea hederacea.
Luca Soldini
Abstract. For more than a century, scientists have worked to characterize, understand, and predict the consequences of mutations. For almost as long, scien
Put simply: It coordinates action in more varied and context-dependent ways across more complex environments, AND it regulates a more complex internal environment.
Highly recommend this chapter from Sterling and Laughlin!
link.springer.com/article/10.1...
Comparative transcriptomics reveals an extracellular worm Argonaute as an ancestral regulator of LTR retrotransposons
academic.oup.com/gbe/advance-...
link.springer.com
In Principles of Neural Design (2015, MIT Press), inspired by Charles Darwin, Sterling and Laughlin undertook the unfashionable task of distilling principles from facts in the technique-driven, data-s...
Abstract. Evolutionary “fitness” is operationalized in many different ways in models. Its role is to quantify that which is favored by natural selection. G
Abstract. Safeguarding the genome from non-self elements is essential for development, reproduction, and ageing. One of the major threats to genomic integr
Our latest preprint doi.org/10.32942/X2V... explains why fitness can be defined in so many ways, and which version(s) you should use when. Fitness quantifies what natural selection favors. 1/
