Check all details behind ForSys and its validation in our bsky.app/profile/cp-i... publication: www.cell.com/iscience/ful.... This protocol focuses on how to actually run it, step by step
GUI users: install the ForSys plugin in Fiji via Help→Update→Manage Update Sites. Add sites.imagej.net/ForSys, restart, then open Plugins→ForSys. Point it to your image folder, set your conda environment, and hit Run! No coding needed.
Amazing paper in @pnas.org of @yanlanmao.bsky.social lab featuring @giuliapaci.bsky.social and colleagues!!
Scripting is also easy! Load your images into Frame objects, then pass them to ForSys: import forsys as fs → build frames{} per timepoint → forsys = fs.ForSys(frames) and then infer. Works for both experimental 🔬 and in silico 💻 data!
