Under the CEU bottleneck model, we observed consistently minor effects of phasing errors. The difference between ARG inference methods is much larger than the difference in performance between using true haplotypes and computationally phased haplotypes.
5/7
Overall, ARG inference tools have demonstrated remarkable robustness to computational phasing errors. While various practical challenges may limit ARG inference quality, we believe that computational phasing inaccuracies should not be a problem of concern.
7/7