Overall, ARG inference tools have demonstrated remarkable robustness to computational phasing errors. While various practical challenges may limit ARG inference quality, we believe that computational phasing inaccuracies should not be a problem of concern.
7/7
Under a selective sweep model, we saw little difference in branch-length-based diversity between ARGs inferred from true and computationally phased haplotypes, demonstrating the practicality of applying ARGs inferred from unphased data in evolutionary analyses.
6/7
