The kaggle competition may be over, but we remain excited to see solutions from #TeamTomo!
If you're interested in checking whether your algorithm beats the kaggle winners' please don’t hesitate to give it a go and make a submission to the data portal!
Our first deposition of synaptic vesicles segmentations is now in the Cryo ET Portal! We segmented vesicles in over 50 tomograms to enable analysis of membrane proteins and more.
cryoetdataportal.czscience.com/depositions/...
Finally in print: rdcu.be/eCtnb
For the #ML and #CryoET folks out there:
Are folks on here submitting to the CZII CryoET Object Identification competition: www.kaggle.com/competitions... ?
The leaderboard is really interesting, and the forums are full of insights.
How many of the latest picking models have been submitted?
Thanks for highlighting the depositions @uermel.bsky.social! The CZ #CryoET data portal and EMPIAR are incredibly important community resources for sharing tomo data, helping accelerate method development and biological discovery🧪🧶🧬
As of 2021, ~530 drugs available on the market are targeted #GPCRs.
About 60% of the total #GPCR complex structures solved have been resolved by #cryoEM.
Cryo-EM enables visualization of GPCRs in complex with trimeric G-proteins, in a variety of conformations.
📑 Learn more: bit.ly/gpcr
Exciting update on the CryoET Data Portal! A new annotation set from Mart Last & team is now live. They’ve doubled available annotations with >1,800 tomograms of Chlamydomonas reinhardtii which now have almost fully dense labels, and all can be visualized in the browser using Neuroglancer.
Results from CZII's #cryoET object detection challenge on kaggle are in!
Participation exceeded our expectations with 931 Teams from 76 countries competing, generating over 27,000 submissions. For an overview check out our post-competition page: cryoetdataportal.czscience.com/competition
Now that the competition is closed, we're releasing all 492 runs, including raw data, tomograms and ground truth annotations as a benchmark dataset for the community. Find the datasets here: cryoetdataportal.czscience.com/depositions/...
New on the CryoET Data Portal: ~27,000 tomograms of affinity-captured lysosomes from HEK293T cells across 4 physiological states. Includes raw data, AreTomo3 reconstructions & Membrain-Seg annotations. Openly available for reuse!
cryoetdataportal.czscience.com/depositions/...