As part of POPSICLE we created 80 manually curated segmentations of gram-negative bacterial cells across 8 species, now available on the cryoET Data Portalš cryoetdataportal.czscience.com/depositions/...
We're happy to announce our new preprint! šø easymode: general pretrained networks for cellular cryo-ET. Segment ~20 cellular features ā ribosomes, microtubules, mitochondria, nuclei & more ā with zero model training. š doi.org/10.64898/202... š§µš
In a series of 3 papers and preprints, weāre thrilled to share with you the working laser phase plate. In collaboration with research led by Holger MĆ¼ller at UC Berkeley, this is a huge innovation in imaging to make small and faint objects inside cells visible. bit.ly/4vK9LVn
Deposition
cryoetdataportal.czscience.com
Biohub
Allegretti Lab
Utz Ermel
Excited to see POPSICLE out! š¦ A combined benchmark for cryoET and evaluations with common segmentation models. Find the full dataset here: huggingface.co/datasets/bio...
Proteins are the machinery of life. Billions of their sequences have been catalogedābut the biology behind most is still unknown. Today we're releasing ESMFold2, ESMC and ESM Atlas to help change that. Open source, open to every scientist. biohub.ai/esm/protein
Thanks to @uermel.bsky.social from the @biohub.org for helping me upload my unpublished tomograms from my time at Caltech. FIB milled and cryosectionned Arabidopsis cells and Pollen tubes (thread š§µ).
