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A Perspective discusses challenges in macromolecular ensemble prediction and the methodological advances that are needed. @stephanieaw.bsky.social www.nature.com/articles/s41...
Check out our new review article on intrinsically disordered #microproteins now out in @acs.org Biochemistry! pubs.acs.org/doi/10.1021/...
6d
22h
Wu and Hegde annotate and analyze the topology of 4,863 human endoplasmic reticulum–inserted membrane proteins and their 20,546 transmembrane domains, showing that transmembrane domains inserted by different pathways can tolerate different biophysical properties. rupress.org/jcb/article/...
www.nature.com
This Perspective discusses current challenges in macromolecular ensemble prediction and the infrastructure and methodological advances needed to overcome these barriers.
pubs.acs.org
Advances in genomics, proteomics, and bioinformatics have uncovered the existence of thousands of translated small open reading frames less than 100–150 codons in length that encode microproteins. In ...
From possibility to precision in macromolecular ensemble prediction - Nature Methods
No Time to Fold: Intrinsically Disordered Microproteins in Action
How does the mycobacterial vacuole go from damage that can still be repaired to full rupture? šŸ‘€ Our new preprint shows that EsxA and PDIM act sequentially: EsxA initiates repairable lesions, and PDIM helps push them past host repair capacity toward cytosolic escape. doi.org/10.64898/202...
15d
13d
Dr. Thomas MartĆ­nez
StruCloze: A Unified Framework for Backmapping and Inpainting Biomolecule Structures doi.org/10.1021/acs....
Journal of Cell Biology
Streaming Molecular Dynamics Simulation Data for On-the-fly Processing and Analysis arxiv.org/abs/2605.24271
12d
Some very cool simulations, look at those little guys climb that ladder! #MolecularNodes
I'm incredibly proud to share our paper on the preclinical evaluation of the BNT164 mRNA tuberculosis vaccine candidates. Now online in the final version at Nature Immunology. www.nature.com/articles/s41...
What would happen if Darwin, Russell Wallace and Koch walked into a bar? We present our new way to study mycobacteria, employing a macroevolution framework (species not strains). Possibilities are endless!! Thanks to Fernanda Subtil for pushing this. elifesciences.org/articles/101...
13d
15d
3h
4d
arxiv.org
Only a small fraction of the data generated in state-of-the-art all-atom multi-microsecond molecular dynamics (MD) simulations is typically analyzed. With femtosecond integration steps, microsecond si...
Streaming Molecular Dynamics Simulation Data for On-the-fly Processing and Analysis
Using macroevolution, species not strains, uncovered important diversity in how mycobacteria respond to and resist antibiotics, revealing novel resistance determinants.
elifesciences.org
Video
A macroevolution-inspired approach to reveal novel antibiotic resistance mechanisms
Soldati Lab
Matthieu Chavent
Nature Methods
Kresten Lindorff-Larsen
Brady Johnston
Louis Ates
Luiz Pedro Carvalho, PhD
šŸš€ Sponsorship opportunities still available šŸ“ Lyon, France | 14–16 October 2026 Registration opening soon. Stay tuned for further announcements! #CGML2026 #MachineLearning #MolecularModeling #CoarseGrained #DrugDiscovery #Formulations #MaterialsScience
5d
Paulo C. T. Souza
Here the authors characterize mRNA-based tuberculosis vaccine candidates BNT164a1 and BNT164b1 and show that they are immunogenic, well tolerated and efficacious in preclinical animal models.
www.nature.com
mRNA-based tuberculosis vaccines BNT164a1 and BNT164b1 are immunogenic, well tolerated and efficacious in rodent models - Nature Immunology
Excited to share this paper from @yiechanglin.bsky.social showing how lipids can move between bacterial membranes along the bridge like protein TamB. Also happy to be able to post the cool movie. šŸŽ„šŸŒŸ #MDsimulations #StructuralBiology doi.org/10.1016/j.bp...
16d
Video