Fascinated by plant-endophyte interactions under biotic stress🌱
Xinya Pan
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Sometimes it's not only important WHAT you sample, but HOW you do it 🌱
Our new preprint is out!
We introduce a scalable, reproducible framework for agricultural rhizosphere sampling that tackles operational definitions, pooling strategies & preservation methods head-on.
tinyurl.com/muxehfvz
Excited to share our new preprint on rhizobacterial biosensors mapping sucrose exudation 🌱
Work spanning my TomKat postdoc in @josedinneny.bsky.social's lab to my own lab at @universityofga.bsky.social; co-first with my PhD student Gretchen Brinkman: 🧵
biorxiv.org/content/10.6...
www.biorxiv.org
Very proud to share our new paper led by Mathias Brands from my team at @UniCologne! With Markus Pauly team @HHU. Host-adapted enzymatic deconstruction of acetylated xylan limits immune activation and facilitates mutualistic colonization of monocot roots: Molecular Plant www.cell.com/molecular-pl...
Chris Dundas
Cultivos más resistentes a la sequía 💧 de forma natural mediante la 👨🌾 agricultura ecológica. Científicos de la UMA - @ihsmumacsic.bsky.social han demostrado cómo esta técnica ayuda a las 🪴 plantas a hacer frente al cambio climático 🔗 http://u.uma.es/hZC/
New publication: Plant Coumarins #Modulate Natural Product #Biosynthesis in a #Streptomyces #Root #Endophyte, by @gillesvanwezel.bsky.social and others.
doi.org/10.1021/acs....
Team_Zuccaro
Curious how ecological #research works? Visit NIOO's #OpenDay on 3 October! Neighbours, green professionals and policy makers, children (and their parents), everyone is welcome. Join a lab tour, play an ecology-themed game, and learn about new insights in #ecology.
We updated our comparative genomics pipeline bacLIFE, it will now make use of BAKTA and BiG-SCAPE in addition to the newest PFAM and DBCAN database. LAGs and GCFs are now better annotated. Several other minor changes are included too. @vcarryon.bsky.social
github.com/Carrion-lab/...
A quick thread summarizing our new bioRxiv preprint on using CASTs for DNA barcoding to tell "look-alike" bacteria apart (Sphingomonas edition)!! Enjoy the read! ✨
Chemical dialogues at the crossroads of host–bacteria interactions
@cp-trendsplantsci.bsky.social by Emtinan Diab, Nicola Thome, Somayah Elsayed, @raaijmakersjm.bsky.social and @gillesvanwezel.bsky.social
www.cell.com/trends/micro...
Because of several major changes when updating baclife I recommend reinstalling all conda environments.
Major changes
We do not longer rely on PROKKA which will no longer be updated. BacLIFE now ...
This study identifies a monocot-specific enzymatic module in the beneficial root endophyte
Serendipita indica, showing how ancestral saprotrophic enzymes have been repurposed
into an immune-compatible...
