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Frustrated football player, I moved to a less relevant work: microbiologist interested on mobile genetic elements
José R Penadés









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🚨Online Seminar NEXT WEEK- 10.06.26 | 16:00 UK Alvaro Sanchez: "The latent simplicity of microbial ecological interactions" Please share & to attend online please register to our 📧: lists.cam.ac.uk/sympa/subscr...
8d
Theory of Living Matter Group
Viruses are highly abundant in the oceans, but there is one place you won't typically find them: in global ocean ecosystem models... until now. Introducing "vDarwin", an explicit integration of viruses into the MITgcm/Darwin global ecosystem framework: www.biorxiv.org/content/10.6... a 🧵
Great piece and cover @science.org about how our field is uncovering the evolutionary and mechanistic connections between bacterial and eukaryotic immunity ! www.science.org/content/article/ancient-wars-between-microbes-gave-us-key-immune-defenses
Revisiting the life cycle of temperate phages @natrevmicro.nature.com by @jakob-tr.bsky.social, Cora Chmielowska, @albertomarina.bsky.social, and @jrpenades.bsky.social www.nature.com/articles/s41... #PhageSky
20d
13d
Our new study reveals how bacterial toxins are physically captured through a sequential, concentration-dependent assembly mechanism before secretion via the T6SS. Fantastic collaboration with @fillouxlab.bsky.social. Congrats Patricia & Ambre for leading this work. Paper here: shorturl.at/O31Vn
18d
14d
Excited to share this new paper from the lab: academic.oup.com/ismej/articl...! See thread below
A nice piece at @science.org covers the exploding field of bacterial immunity, and how it led to the understanding that components of the human immune system evolved from bacterial defenses against phage www.science.org/content/arti...
Aude Bernheim
The life cycle of temperate bacteriophages involves lytic or lysogenic cycles and has historically served as a model for studying genetic regulation. This Review provides an updated overview of these ...
Revisiting the life cycle of temperate phages - Nature Reviews Microbiology
www.nature.com
Out Now! Molecular basis of type VI secretion system effector loading #MicroSky
Joshua Weitz
Structural analysis reveals that the type VI secretion system effector cargo is enclosed within hexameric Hcp3 rings that form sequentially to enable effector loading and delivery by the Pseudomonas aeruginosa H3-type VI secretion system.
shorturl.at
Molecular basis of type VI secretion system effector loading - Nature Microbiology
8d
Ákos T Kovács
21d
15d
📢 We are recruiting! I’m looking for a Research Associate in Structural Biology to join my lab at Imperial College London to study horizontal gene transfer using cryo-EM, biochemistry and microbiology. Please share with interested candidates! Apply: shorturl.at/gmJGS
Abstract. Phage therapy offers an alternative to antibiotics for treating multidrug-resistant infections. Plasmid-dependent phages (PDPs) are promising the
academic.oup.com
Eco-evolutionary responses to plasmid-dependent phage constrain the spread of multidrug-resistance plasmids
A better understanding of battles between bacteria and viruses could inspire new medicines
Ancient wars between microbes gave us key immune defenses
www.science.org
Happy to see the paper out in Cell Host & Microbe. congratulations Ilya!
6d
Tiago Costa
12d
Please note that job descriptions are not exhaustive, and you may be asked to take on additional duties that align with the key responsibilities ment...
www.imperial.ac.uk
Description
Tiago Costa
Craig MacLean
Nature Microbiology, Published online: 27 May 2026; doi:10.1038/s41564-026-02363-xStructural analysis reveals that the type VI secretion system effector cargo is enclosed within hexameric Hcp3 rings that form sequentially to enable effector loading and delivery by the Pseudomonas aeruginosa H3-type VI secretion system.
go.nature.com
Molecular basis of type VI secretion system effector loading
Sorek Lab
Nature Microbiology
Sorek Lab
Our aRES story is finally out 😀 Beyond what was reported in the preprint, we found that aRES is activated by direct binding of the phage DNA polymerase. Another NAD-degrading defense system — and multiple phage strategies to overcome it. www.sciencedirect.com/science/arti...
12d
Many bacterial defense systems restrict phage infection by breaking down the molecule nicotinamide (Nam) adenine dinucleotide (NAD+) into adenosine di…
www.sciencedirect.com
Bacterial defense via RES-mediated NAD+ depletion is countered by phage phosphatases
Osterman Ilya
🧬 Metabolic arms race continues! We discovered a new NAD⁺-depleting bacterial immune system aRES and phage enzymes that overcome it. Our preprint is out: www.biorxiv.org/content/10.6...
4mo
Many bacterial defense systems restrict phage infection by breaking the molecule NAD+ to its constituents, adenosine diphosphate ribose (ADPR) and nicotinamide (Nam). To counter NAD+ depletion-mediated defense, phages evolved NAD+ reconstitution pathway 1 (NARP1), which uses ADPR and Nam to rebuild NAD+. Here we report a bacterial defense system called aRES, involving RES-domain proteins that degrade NAD+ into Nam and ADPR-1″-phosphate (ADPR-1P). This molecule cannot serve as a substrate for NARP1, so that NAD+ depletion by aRES defends against phages even if they encode NARP1. We further discover that some phages evolved an extended NARP1 pathway capable of overcoming aRES defense. In these phages, the NARP1 operon also includes a specialized phosphatase, which dephosphorylates ADPR-1P to form ADPR, a substrate from which NARP1 then reconstitutes NAD+. Other phages encode inhibitors that directly bind aRES proteins and physically block their active sites. Our study describes new layers in the NAD+-centric arms race between bacteria and phages and highlights the centrality of the NAD+ pool in cellular battles between viruses and their hosts. ### Competing Interest Statement The authors have declared no competing interest. European Research Council, ERC-AdG GA 101018520 Israel Science Foundation, MAPATS grant 2720/22 Deutsche Forschungsgemeinschaft, SPP 2330, grant 464312965 Minerva Foundation with funding from the Federal German Ministry for Education and Research research grant from Magnus Konow in honor of his mother Olga Konow Rappaport Ministry of Aliyah and Immigrant Absorption, https://ror.org/05aycsg86 Clore Scholars Program
www.biorxiv.org
Bacterial defense via RES-mediated NAD+ depletion is countered by phage phosphatases
Osterman Ilya