Evolutionary genomics of aquatic pathogens; Assoc. Prof. at Tokyo University of Marine Science and Technology, Japan
https://researchmap.jp/satoshi_kawato?lang=en
Satoshi Kawato 川戸智
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Circular genome comparison is now live in #gbdraw! 🚀 The built-in LOSATN instantly runs pairwise alignments and generates homology rings for your sequences, 100% in your browser! Try it out: gbdraw.app #bioinformatics #genomics #microbiology
おかげさまで、gbdrawのGitHub starsが100個になりました。ありがとうございます!
gbdrawのロゴを作りました。広葉樹林の地図記号...ではないです #gbdraw
It’s one thing to find a duplicate manuscript, but it’s another level of audacity when they cite the original non-English paper they’re copying from. The results and figures were identical
🧬Collinearity Analysis is here in #gbdraw v0.11.0! You can easily detect and visualize synteny and collinearity blocks using LOSATP. You can instantly align the entire diagram based on a shared ortholog!
Try it now: gbdraw.app
#bioinformatics #genomics #microbiology
🚀Excited to release ganflu!
A serverless web app to predict CDS for all major influenza viruses (IAV, IBV, ICV, & IDV).
🧬Runs entirely in your browser; your data never leaves your machine.
🔗Try it out: ganflu.app
#Bioinformatics #Virology #Influenza #OpenScience
gbdraw v0.10.0 webapp is now available!🧬
Major updates:
🔹Depth track support: Visualize your mapping depth simply by uploading samtools depth TSV files.
🔹Multithreaded LOSAT: Parallel execution to speed up multiple sequence comparisons.
Check it out: gbdraw.app
#bioinformatics #microbiology
gbdraw: a genome diagram generator for microbes and organelles https://www.biorxiv.org/content/10.64898/2026.04.07.716863v1
Satoshi Kawato 川戸智
Want to find #prophage in your #bacteria genomes? We built PhiSpy a long time ago, and now we've created a new web page for it: linsalrob.github.io/PhiSpyWeb/
Best of all, the data never leaves your computer!
#phage #phagesky
Our paper unpacking "fitness" is out doi.org/10.1093/gene.... How to define fitness depends on what question you ask. Selection acts on organismal vital rates, longer-term outcomes make sense for genetic lineages, models link them. "Invasion fitness" = speed, but sometimes probability matters more.
