Molecular evolution and bioinformatics at Uni Muenster, Germany. Protein evolution | domains | de novo genes | comparative evolutionary genomics
http://bornberglab.org/
Bornberglab
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We were delighted to welcome Aoife McLysaght to Münster as this year’s speaker for our faculty’s annual Bernhard-Rensch Lecture. She gave a great talk on “Unlocking the Evolutionary Potential of Whole Genome Duplication.” Thank you for sharing your insights with us!
This year, our group traveled to Diever for our retreat.
Alongside a series of great talks focused on selection, we enjoyed fun activities like an escape room 👽🧪 and axe throwing 🪓.
We also made use of the sunny weather with hikes through the beautiful nature surrounding Diever. ☀️🌳
Marie traveled to the beautiful Hamburg to attend this year’s Graduate Meeting of the Evolutionary Biology Section of the DZG. Many thanks to the organizers for putting together such a nice meeting, featuring great talks and networking opportunities! 🧬☀️
Bornberglab
Check out this new paper on horizontal gene transfer in termites, to which former group members Alina and Mark contributed. 🪳🧬
You can have a look here:
doi.org/10.1093/evol...
🚨 New paper in GBE! 🚨
This study analyzes two high-quality Cryptocercus genomes, the sister group to all termites, to investigate the transition to subsociality and wood-feeding (xylophagy) in Blattodea. 🪳
Check it out here:
doi.org/10.1093/gbe/...
Above the read version, find the link for the full version here: www.nature.com/articles/s41...
New paper! 📢
The authors used droplet microfluidics to study aryl sulfatases and their ancestors. They show higher mutation rates gave a wider distribution of active variants but fewer improved variants overall and highlight the need to test diverse mutagenesis regimes.
doi.org/10.1039/D5AN00865D
New review out in Nat Rev Genet: Emergence & evolution of protein-coding de novo genes by Erich and Lars Eicholt @lacholt.bsky.social. How non-coding DNA becomes translated, persists or is lost in populations, and can yield structured/functional proteins—plus methods & open questions! rdcu.be/e09SM
Bornberglab
Bornberglab
Check out our new review in Nature Reviews Genetics on de novo emerged genes and proteins. How they emerge, are lost and persist - and how de novo emerged proteins relate to randomized proteins! @bornberglab.bsky.social www.nature.com/articles/s41...
Abstract. Horizontal gene transfer (HGT), the transmission of genetic material across species, is an important innovation source in prokaryotes. In contras
Nature Reviews Genetics - De novo gene evolution entails the birth of new genes from previously non-coding DNA. In this Review, Bornberg-Bauer and Eicholt overview how protein-coding de novo genes...
🧬 What does the starting material from which genes could emerge #denovo look like?
🌱 We used #RiboSeq to investigate the landscape of translated de novo ORFs in 3 #Arabidopsis species, and how they might be linked to gene birth!
📝 Check out our preprint here:
doi.org/10.1101/2025...
Bornberglab
Bornberglab
De novo gene evolution entails the birth of new genes from previously non-coding DNA. In this Review, Bornberg-Bauer and Eicholt overview how protein-coding de novo genes are identified, the mechanist...
New review out in Nat Rev Genet: Emergence & evolution of protein-coding de novo genes by Erich and Lars Eicholt @lacholt.bsky.social. How non-coding DNA becomes translated, persists or is lost in populations, and can yield structured/functional proteins—plus methods & open questions! rdcu.be/e09SM
Nature Reviews Genetics - De novo gene evolution entails the birth of new genes from previously non-coding DNA. In this Review, Bornberg-Bauer and Eicholt overview how protein-coding de novo genes...rdcu.be
Abstract. Subsociality and wood-eating or xylophagy are understood as key drivers in the evolution of eusociality in Blattodea (cockroaches and termites),
Ancestrally non-genic sequences are now widely recognized as potential reservoirs for the de novo emergence of new genes. Across clades, some de novo genes were proven to have substantial phenotypic effects, and to contribute to the emergence of novel biological functions. Yet, still very little is known about the starting material from which de novo genes emerge, especially in plants. To fill this gap, we generated Ribosome Profiling data from the closely related species Arabidopsis halleri, A. lyrata and A. thaliana and characterized genome-wide patterns of translation across them. Synteny analysis revealed 211 Open Reading Frames (ORFs) that have emerged de novo within the Arabidopsis genus and already exhibit signs of active translation. Most of these de novo translated ORFs were species- and even accession-specific, indicating their transient nature, with patterns of polymorphism consistent with neutral evolution in natural populations. They were also significantly shorter and less expressed than conserved Coding DNA Sequences (CDS), and their GC content increased with phylogenetic conservation. While most of them were located in intergenic regions and are thus newly discovered, 34 were previously annotated as CDS in at least one genome, and are promising putative genes. Our results demonstrate the abundance of translation events outside of conserved CDS, and their role as starting material for the emergence of novel genes in plants. ### Competing Interest Statement The authors have declared no competing interest. Université de Lille, https://ror.org/0546v5182
Characterizing the dynamics and functional shifts during protein evolution is essential, both for understanding protein evolution and for rationalizing efficient strategies for e.g. enzymes with desir...
doi.org
De novo gene evolution entails the birth of new genes from previously non-coding DNA. In this Review, Bornberg-Bauer and Eicholt overview how protein-coding de novo genes are identified, the mechanist...
Dear all,
The deadline has been extended to 27 February!
We will host the 29th DZG Graduate Meeting in Evolutionary Biology!
Don’t miss this great opportunity to share your research, exchange ideas, and connect with other researchers in evolutionary biology.
Scan the QR for details👇