High-dimensional data is hard to understand. But is it truly cursed?
To help you build better intuition for high-dimensional datasets, @lekschas.de and I developed dtour, a visualization tool for smoothly navigating through data projections.
Did you ever want to control frontend apps through AI while being able to take over at any point? I built a library called MCP-Web that lets you expose state, actions, and UI as MCP tools+apps for AI while maintaining human agency.
Code: github.com/flekschas/mc...
Docs: mcp-web.dev
Very much an alpha.5 release but still handy 👍 Been using this for odds and ends the past few months.
Released juv v0.3.0! 🎉
Brings uv's locking for standalone scripts to Jupyter notebooks. Lockfiles are embedded directly in metadata for self-contained, reproducible notebooks.
- `juv lock` generates a lockfile
- `juv tree` shows dependencies
- `juv export` outputs pip-compatible format
Pileup support is shaping up to be both performant and beautiful thanks to the Rust powered Oxbow package:
github.com/abdenlab/oxb...
Big shout out to @nvictus.bsky.social and @manzt.sh for implementing key features like buffering and file-like pointer support!
On it!
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I'm proud to announce the latest release of 🧬 #Oxbow 🏹, with new features to make NGS data analysis more powerful, efficient, and "composable".
Learn more at: oxbow.readthedocs.io
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Nezar Abdennur
Fritz Lekschas
Peter Kerpedjiev
Peter Kerpedjiev
trevor manz
resgen.io
spent some time last weekend getting higlass to play nicely inside @marimo.io
molab.marimo.io/notebooks/nb...
This was a really fun project that was cooking up in our heads for years. AI coding finally made it possible to build the idea in the evenings :)
Still super thankful for the embedding reading club that @nvictus.bsky.social organized with folks from Mirny Lab back in 2020 or 2021!
Alright, it's still very much a work in progress, but you can now run resgen locally to view data that's on your machine without uploading to resgen.io.
docs.resgen.io/local/runnin...
New higlass-pileup update lets you sort reads by base! Available for use directly in a Juptyer notebook thanks to @manzt.sh. See docs for an example of how to use it:
docs-python.higlass.io/examples.htm...
