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Modern GWAS can identify 1000s of significant hits but it can be hard to turn this into biological insight. What key cellular functions link genetic variation to disease? I'm very excited to present our new work combining associations and Perturb-seq to build interpretable causal graphs! A 🧵
Jan 26, 2025
Jonathan Pritchard
Nov 11, 2024
🆕 Blog: Genomics scientists from and in Mexico community building lcolladotor.github.io/2024/11/11/g... I want our voices🇲🇽 to be heard from the scientific community. But to be heard, we have to be a part of it #LCG-UNAM #LCG-EJ-UNAM @cdsbmexico.bsky.social #NNB-UNAM #RMB youtu.be/OVMw0k6AydA?...
check out our new preprint led by Charles Zhou and supervised by Mengjie Chen and me doi.org/10.1101/2024... where we present scPrediXcan which integrates deep learning and single cell expression data into a powerful cell type specific TWAS framework
Nov 15, 2024
Jun 11, 2024
1/At the #HoffmanLab lab meeting, we often have tech talks describing useful tools for other lab members. Since they might also prove useful for others, we've been posting almost every #HoffmanLabTechTalk for years. 🧪🧬💻
Peter Buxtun, the whistleblower who revealed that the U.S. government allowed hundreds of Black men in rural Alabama to go untreated for syphilis in what became known as the Tuskegee study, has died. He was 86. apnews.com/article/buxt...
Jul 16, 2024
We're Hiring! Computational Biologist / Genomic Data Scientist. Join our lab to use cutting-edge data & AI/ML to advance human health. - Genetics & Genomics analysis - AI/ML in biology - Solving real-world genomic problems 📄 Full details: docs.google.com/document/d/1...
with invaluable contributions from @temicrates Lisha Zhu @ssalazar_02 Sarah Sumner Hyunki Kim Saideep Gona @Festus_nyasimi Rohit Kulkarni @drjosephpowell @madduri @boxiangliu
🇲🇽 Leonardo Collado-Torres
2mo
Nov 15, 2024
Dr Abeba Birhane
I'm hiring a computational biologist interested in complex trait genetics using deep learning approaches. Reach out to me, if interested.
Michael Hoffman
Need a break from doomscrolling? Do you study the genetics of disease subtypes? Have you ever wondered how to efficiently run gene-based associations with multicategorical outcomes? Join us for the IGES Journal Club on Wednesday, February 26, 2025! 11AM ET.
Haky Im
Haky Im
Haky Im
9mo
Feb 14, 2025
Check out our scPrediXcan paper www.cell.com/cell-genomic... Led by the talented @Charles_Zhou12 and supervised by @MengjieChen6 and me, with thanks to many contributors. scPrediXcan integrates deep learning and single cell expression data into a powerful cell type specific TWAS framework.
May 14, 2025
Haky Im
Haky Im