Postdoc researcher in bioinformatics at Pasteur institute. Scalable methods and software for metagenomics. https://github.com/GaetanBenoitDev
Gaëtan Benoit
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🌎 🧬 🖥️ logan-search.org the tool to query all SRA sequences (Dec 2023 snapshot) — just got major updates. Here's what's new. 🧵 1/12
Thought i'd highlight that the ONT London Calling tech talk is now up. Points of interest for the microbiome community:
1) Direct RNA multiplexing now available. Can now run 24 samples per flow cell, recover full-length transcripts with 8 base pair modifications...
www.youtube.com/watch?v=CE69...
Glad to announce that our new long-read metagenomic SNP caller, SNooPy, is published in NAR! Existing long-read SNP callers are not designed for metagenomic data, check out our new solution
👉https://academic.oup.com/nar/article/54/10/gkag556/8700491
@narjournal.bsky.social
Just submitted my PhD thesis on algorithms for fast, large-scale k-mer-based sequence analysis. It's now available to read at phd.martayan.org
Take a look and feel free to share!
#Bioinformatics #PhDone
New blog post!
I analyse the new [email protected] basecalling model from @nanoporetech.com and discuss the conspicuous lack of a new sup model:
rrwick.github.io/2026/06/11/d...
