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Postdoc at Siepel Lab, CSHL Statistical genetics, phylogenetics, and optimization
Nurdan Kuru






#BoG25 at home - CSHL
May 11, 2025
Nurdan Kuru
A gene called NOVA1 may be part of the solution to the mystery of how our ancestors evolved language. Here's my story about mice with strange squeaks. [Gift link] nyti.ms/3XuVehN đŸ§Ē
Feb 18, 2025
NOVA1, a neuron-specific RNA binding protein & splicing factor, likely impacted language function in human evolution. Human NOVA1 is unique (vs mammals, Neanderthals), & it changes vocalization in CRISPR’d mice! TY @NatureComms @RockefellerUniv team, collaborators @erichjarvis @asiepel labs đŸ§ĩ👇
All data generated in this study and all benchmark analysis scripts and source codes for PHACE are available at github.com/CompGenomeLa...
Our new algorithm PHACE: Phylogeny-Aware Detection of Molecular Coevolution, by me and OgÃŧn Adebali (@compgenomics.bsky.social), is now published in Molecular Biology and Evolution. Many thanks to @nehircanozdemir.bsky.social for the beautiful illustration of PHACE!
Feb 18, 2025
11mo
11mo
Carl Zimmer
A phylogeny-aware approach to detecting amino acid coevolution: PHACE. Instead of relying on sequence alignments only, it maps substitutions onto evolutionary trees and accounts for shared ancestry. A nice step toward more accurate models of protein evolution and structure.
Nurdan Kuru
2mo
Nurdan Kuru
Bob Darnell
Our new algorithm PHACE: Phylogeny-Aware Detection of Molecular Coevolution, by me and OgÃŧn Adebali (@compgenomics.bsky.social), is now published in Molecular Biology and Evolution. Many thanks to @nehircanozdemir.bsky.social for the beautiful illustration of PHACE!
11mo
Nurdan Kuru
Caroline Puente-Lelievre
Coming up on August 5 đŸ—“ī¸ Nurdan Kuru @nurdankuru.bsky.social shares phylogeny-aware methods for variant effect prediction. Ferdy van Geest dives into MCT8 variants & thyroid disease. Computational meets clinical! #Genetics #RareDisease #MedicalGenetics â„šī¸ www.varianteffect.org/seminar-seri...
11mo
A new study suggests that the NOVA1 gene may have been a key player in the evolution of human language.
nyti.ms
The Gene That Made Mice Squeak Strangely (Gift Article)
@nurdankuru.bsky.social & Adebali present PHACE, a phylogeny-aware coevolution algorithm that maps amino acid substitutions onto a phylogenetic tree to detect molecular coevolution. 🔗 doi.org/10.1093/molbev/msaf150 #evobio #molbio #phylogenetics
@nurdankuru.bsky.social & Adebali present PHACE, a phylogeny-aware coevolution algorithm that maps amino acid substitutions onto a phylogenetic tree to detect molecular coevolution. 🔗 doi.org/10.1093/molbev/msaf150 #evobio #molbio #phylogenetics
11mo
11mo
Atlas of Variant Effects Alliance
Molecular Biology and Evolution