Being exposed to the importance and nuances of engagement with the public and patient, policy, and stakeholders at this @target-amr.bsky.social conference. More stuff to think about! I presented my work on evaluating genomic surveillance methods for Shigella sonnei. doi.org/10.64898/202...
Hello world! After a year in the making, the Pathogen Dynamics Unit is ready to launch! Check out our website (pdu.gen.cam.ac.uk) and follow the team (bsky.app/profile/did:...) to keep up with the latest from our infectious disease supergroup based at @geneticscam.bsky.social
Charles Wei
Pathogen Dynamics Unit
Fantastic conference and science, still super hyped-up on Day 4. Blessed weather as well.
Tired of fragmented bacterial GWAS workflows? Try BaGPipe (Bacterial GWAS Pipeline)—a fully automated, flexible Nextflow pipeline integrating Pyseer for streamlined association studies. Reproducible. Scalable. Efficient. doi.org/10.1101/2025...
#Nextflow #BacterialGWAS #AMR #Bioinformatics
It took years after my masters to publish BaGPipe, now it's out! It's a Nextflow pipeline to run end-to-end bacterial GWAS, heavily tested and benchmarked on different datasets, and now in good hands of the Sanger's Pathogen Informatics Team. link.springer.com/article/10.1...
Charles Wei
BMC Microbiology - Microbial genome-wide association studies (GWAS) are crucial for linking genetic variation to phenotypic traits in bacteria. However, current tools often involve complex manual...
Microbial genome-wide association study (GWAS) tools often require manual data processing steps, lack comprehensive workflows, and are limited by scalability issues, thus hindering the exploration of ...
doi.org
Looking good on Day 3 of #Shigella2026 ☀️🇫🇷🧫
🎉 We’re back for another insightful day!
🧬 Building the future of AMR Genomics
💡 Kicking off with our incredible, short talk abstract submission winners
🙌 Here’s to another amazing day!
#TARGetAMR26
