assistant professor at ucsf interested in genetics, statistics, etc…
jeffspence.github.io
Jeff Spence
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#PEQG26 folks! I will be presenting my postdoc project with @jkpritch.bsky.social and @jeffspence.github.io about inferring population structure dynamics over time with tensor decomposition on ARG. The talk will be at the James Crow Talk session on Wednesday. Look forward to seeing everyone there!
In #GENETICS, @jazlynmooney.bsky.social and the team present a unified theoretical framework for understanding how recombination shapes ancestry patterns after admixture.
🔗 buff.ly/7i4EFAc
got my concluding slide on challenges with estimating ancestral recombination graphs ready for PEQG
We built a joint experimental and computational platform for scalable multi-modal single-cell chemical screens — profiling RNA, protein (including phospho-signaling), and chromatin accessibility responses to thousands of small molecule perturbations in parallel. www.biorxiv.org/content/10.6...
Yun Deng
Check out our new paper presenting pg-gpu, a GPU-accelerated population genetics python package:
www.biorxiv.org/content/10.6... 1/3
Come see my poster tn! For 3 yrs, populations evolved at 43 sites worldwide. I built kMate, an alignment-free, pangenome k-mer method to track SNP & SV frequencies across space & time, opening the door to accurately and efficiently mapping climate-adaptive variants on evolution experiments! #PEQG26
