We’re incredibly grateful to have Alex Bateman on our advisory board. Biology today would look very different without UniProt. Scientific data infrastructure is the bedrock of innovation, and we’re excited to learn from Alex’s experience helping building such a foundational resource.
Yunha Hwang
We're thrilled to welcome @alexbateman1.bsky.social to the SeqHub Advisory Board!
Alex has played a central role in building core global resources for protein science, including UniProt. He has been a longtime leader in developing standards and infrastructure that underpin modern protein analysis.
Most protein-protein interaction tools work on protein pairs. FlashPPI runs at proteome scale and now across two proteomes at once.
Upload any two datasets (full genomes, partial genomes, or custom protein sets) and get back a predicted interaction network spanning both.
We're hosting a live walkthrough of FlashPPI in SeqHub on April 15 at 11am EST.
We'll briefly discuss our protein-protein interaction model then walk through how you can use it in SeqHub.
Register here: forms.gle/iBQrpYnLeiF1...
My group at MIT is seeking a research scientist with a strong *experimental* background to lead and help shape the lab’s experimental infrastructure, supporting efforts to advance AI-driven enzyme discovery and characterization.
See the full JD here: acrobat.adobe.com/id/urn:aaid:...
Tatta Bio
Tatta Bio
Link to the application portal: careers.peopleclick.com/careerscp/cl...
Register to attend the live FlashPPI-focused walk-through of the SeqHub Platform. We'll send you an invite to this email once you submit the form. See you soon!
SeqHub API Beta now live - genomic neighborhood retrieval and functional annotation just became instantaneous🤗
We thought a lot about how to deploy đť‘𝒍𝒂𝒔𝒉𝑷𝑷𝑰, and we are very proud of this implementation that integrates annotation+context+CoSearch+agent with FlashPPI on SeqHub!
Yunha Hwang
SeqHub MSA live, integrated with structure vis! Another user requested feature🤝
Step-by-step how to run FlashPPI on your favorite genomes!
Applications for MIT Novo-Nordisk AI postdoc fellowships are due Apr 15. Focus area lists AI and Biology topics, apply to work on this exciting field with amazing peers! engineering.mit.edu/novo-nordisk
Yunha Hwang
engineering.mit.edu
Potential areas of focus for postdoctoral fellows participating in the MIT-Novo Nordisk Postdoc Program include, but are not limited to, the following: Your complete application should include: In the...
FlashPPI is our new proteome-wide protein-protein interaction prediction model. If you haven't had a chance to try FlashPPI yet, here's what the end-to-end flow looks like in SeqHub:
Programmatic access to SeqHub has been one of the more common user requests. Today we're launching the SeqHub API in beta.
Functional annotations for your protein and its genomic neighbors, derived from genomic language model embeddings. Free for non-commercial use.
seqhub.org/blog/seqhub-...
Video
seqhub.org
The SeqHub API is now in public beta. Submit protein sequences programmatically and get back gLM2-powered functional annotations and genomic context — free for non-commercial use.
🧵 FlashPPI (new model) is live in SeqHub. Proteome-wide PPI prediction in minutes, 2,400x faster than the next best sequence-based method, 4x better predictive performance. How it works: 👇
You can now run a multiple sequence alignment directly on your SeqHub search results.
Once the alignment runs, conserved regions are mapped onto the 3D structure of your query protein. Explore results in SeqHub or download as an a3m file.
