SeqHub MSA live, integrated with structure vis! Another user requested featureπ€
Weβre incredibly grateful to have Alex Bateman on our advisory board. Biology today would look very different without UniProt. Scientific data infrastructure is the bedrock of innovation, and weβre excited to learn from Alexβs experience helping building such a foundational resource.
SeqHub API Beta now live - genomic neighborhood retrieval and functional annotation just became instantaneousπ€
Most protein-protein interaction tools work on protein pairs. FlashPPI runs at proteome scale and now across two proteomes at once.
Upload any two datasets (full genomes, partial genomes, or custom protein sets) and get back a predicted interaction network spanning both.
We're hosting a live walkthrough of FlashPPI in SeqHub on April 15 at 11am EST.
We'll briefly discuss our protein-protein interaction model then walk through how you can use it in SeqHub.
Register here: forms.gle/iBQrpYnLeiF1...
Yunha Hwang
Yunha Hwang
Yunha Hwang
My group at MIT is seeking a research scientist with a strong *experimental* background to lead and help shape the labβs experimental infrastructure, supporting efforts to advance AI-driven enzyme discovery and characterization.
See the full JD here: acrobat.adobe.com/id/urn:aaid:...
Step-by-step how to run FlashPPI on your favorite genomes!
We thought a lot about how to deploy ππππππ·π·π°, and we are very proud of this implementation that integrates annotation+context+CoSearch+agent with FlashPPI on SeqHub!
Link to the application portal: careers.peopleclick.com/careerscp/cl...
Applications for MIT Novo-Nordisk AI postdoc fellowships are due Apr 15. Focus area lists AI and Biology topics, apply to work on this exciting field with amazing peers! engineering.mit.edu/novo-nordisk
You can now run a multiple sequence alignment directly on your SeqHub search results.
Once the alignment runs, conserved regions are mapped onto the 3D structure of your query protein. Explore results in SeqHub or download as an a3m file.
We're thrilled to welcome @alexbateman1.bsky.social to the SeqHub Advisory Board!
Alex has played a central role in building core global resources for protein science, including UniProt. He has been a longtime leader in developing standards and infrastructure that underpin modern protein analysis.
Tatta Bio
Programmatic access to SeqHub has been one of the more common user requests. Today we're launching the SeqHub API in beta.
Functional annotations for your protein and its genomic neighbors, derived from genomic language model embeddings. Free for non-commercial use.
seqhub.org/blog/seqhub-...
Tatta Bio
MIT - Research Scientist, Hwang Lab - Cambridge MA 02139
Potential areas of focus for postdoctoral fellows participating in the MIT-Novo Nordisk Postdoc Program include, but are not limited to, the following: Your complete application should include: In the...
Register to attend the live FlashPPI-focused walk-through of the SeqHub Platform. We'll send you an invite to this email once you submit the form. See you soon!
𧡠FlashPPI (new model) is live in SeqHub. Proteome-wide PPI prediction in minutes, 2,400x faster than the next best sequence-based method, 4x better predictive performance. How it works: π
FlashPPI is our new proteome-wide protein-protein interaction prediction model. If you haven't had a chance to try FlashPPI yet, here's what the end-to-end flow looks like in SeqHub:
Tatta Bio
Video
Video
Tatta Bio
Tatta Bio
The SeqHub API is now in public beta. Submit protein sequences programmatically and get back gLM2-powered functional annotations and genomic context β free for non-commercial use.
