Very happy to see this out. 👏 @yinanwan.bsky.social
Bogdan Bintu and team.
Whole-embryo spatial transcriptomics at subcellular resolution from gastrulation to organogenesis | free link Science www.science.org/eprint/5MHTM...
www.science.org
Gene expression patterns underlie development, but their systematic detection in whole embryos has remained elusive. We introduce a whole-embryo imaging platform using multiplexed error-robust fluores...
1/8. New preprint!
Using fUSi in head-fixed mice🐭, we found that arousal events trigger a brain-wide wave of activity 🌊🧠.
Surprisingly, this pattern was preserved during opto manipulations of the locus coeruleus, pointing to a minor role for noradrenergic tone.
www.biorxiv.org/content/10.6...
New paper out: www.nature.com/articles/s41... 🥳 Congratulations to our PhD student Katja for her inspiring work just published in Nature Communications on how the larval zebrafish brain processes multiple visual features.
Check out a short summary of the work here: tinyurl.com/yzv4ct9k
Whole-body Single-cell Spatial transcriptomic atlas of adult Danionella ~1 cm long
scRNAseq
MERFISH (500-gene)
HCR
Endothelial cell podxl+ (Fig S8)
Vascular vs Visceral mural cell (Fig S10)
Peter Reddien lab bioRxiv 2026
www.biorxiv.org/content/10.6...
Video
Emilie Macé
Bahl Lab
Our updated @napari.org video plugin includes a small widget to play videos with sound. github.com/danionella/n...
Do you know if stout infantfish brain size has been quantified – or is this an assumption based on the smaller body? (obviously a reasonable assumption)
How do brains make decisions when faced with multiple, potentially conflicting cues? In our latest preprint, we show how #zebrafish use an additive strategy and process multiple visual features through anatomically distinct parallel pathways tinyurl.com/mvkn8em9 Thread 👇
Tiny, transparent, and now charted! Our brain atlas of adult Danionella cerebrum includes >200 annotated regions, 29 whole-brain in situs, and male/female reference volumes – openly available, versioned and extendable. Work by @nkadobyansky.bsky.social and team.
www.biorxiv.org/content/10.6...
