Which RNAs are functional? Been a long time goal of @deboramarks.bsky.social to start an RNA sequence β> function and structure mapping.
Huge thx to team for pushing on this when - led by Rohit Arora and Murphy Angelo for seeing this thru and Pascal Notin for pulling together!!!
Weekly: Great papers across the centuries and subjects! Relaxing!
fermatslibrary.com/journal_club
New paper βProteome-wide model for human disease geneticsβ is now live at Nature Genetics: rdcu.be/eRu7K
popEVE (pop.evemodel.org) finds the needles in the haystacks of human genetic variation:
RNA, RNA, RNA -> RNAGym!
read all about it! biorxiv.org/content/10.110β¦
Been a long time goal of @deboramarks.bsky.social We tried a million years ago,
sciencedirect.com/science/articlοΏ½οΏ½οΏ½
Now total refresh led by Rohit Arora and Murphy Angelo and Pascal Notin for pulling together!!
Meet evedesign: open-source AI, accessible protein design
β Combine models for multiobjective optimization
β Integrate experimental data
β Run on your own infrastructure
πPaper: www.biorxiv.org/content/10.6...
π»Code: github.com/evedesignbio
πWebserver: evedesign.bio
Collaborate: [email protected]
End-to-end differentiable homology search for protein fitness prediction.
@yaringal.bsky.social @deboramarks.bsky.social @pascalnotin.bsky.social
arxiv.org/abs/2506.089...
Debora Marks
Debora Marks
My new paper "Deep Learning is Not So Mysterious or Different": arxiv.org/abs/2503.02113. Generalization behaviours in deep learning can be intuitively understood through a notion of soft inductive biases, and formally characterized with countable hypothesis bounds! 1/12
Debora Marks
Debora Marks
Debora Marks
This, by Michael Lynch.
I'd include AI techbros as well.
www.pnas.org/doi/10.1073/...
Debora Marks
Debora Marks
Kevin K. Yang ζ₯ε±η
Video
fermatslibrary.com
Fermatβs Library is a platform for illuminating academic papers. A new scientific paper annotated every week.
End-to-end protein design in the browser through evedesign. Generate and interactively explore designs in 2D/3D and export them as codon-optimized DNA. The underlying open source framework (released soon) is build to easily add new methods, more on that soon.
π evedesign.bio
π¨ New paper π¨ RNA modeling just got its own Gym! ποΈ Introducing RNAGym, large-scale benchmarks for RNA fitness and structure prediction.
𧡠1/9
