Postdoc @DKFZ in the Gerstung group
Previously PhD student @EMBL in the Zaugg group
Exploring the recurrence of cell states across various cancers using spatial and single-cell omics 🧠 🩸
Anna Mathioudaki
Progressive glioblastoma or radiation-induced necrosis? 🧠
Hard to tell on MRI - but spatial transcriptomics tells a different story!
Check out @zaira-sef.bsky.social's preprint for more!
1/ New preprint! 🍳
@elihei.bsky.social and our team at @embl.org , @dkfz.bsky.social, and @mskcancercenter.bsky.social built #segger - a fast, accurate cell segmentation tool for spatial transcriptomics that assigns transcripts to their cell origins!
doi.org/10.1101/2025...
Delighted to present Latent Interaction Variational Inference (LIVI), a framework for trans-eQTL mapping at single-cell resolution that I developed during my PhD together with colleagues from @steglelab.bsky.social 1/n
Tissue organization is fundamental to how tissues function - yet in cancer such spatial patterns can progressively break down. Ever wondered how?!
Check out our new study, where we investigate how lymphoma reshapes lymph node architecture 👀
What if you could get a glimpse of the future of your health, today?
Our scientists have developed a new generative AI model, trained using large-scale health records, that can estimate how human health may change over time.
Watch to find out more.
🖥️🧬
Abigail and Moritz are great mentors - I can only recommend this setup!
Interested in spatial omics and brain tumors? Take a look at this postdoc opportunity 👇
SUM-seq out @natmethods.nature.com !
🚀 Ultra-high-throughput Multiplexed snATAC+RNA
Used to:
⏳ link temporal macrophage GRNs to immune disease genetics
🩸 map T cell regulatory landscapes
🧬✂️ dissect TF function in hiPSC differentiation via CRISPRi/a screens
doi.org/10.1038/s41592-025-02700-8
🧵
Anna Mathioudaki
Thrilled to share that our work from Trumpp Lab @hi-stem @dkfz.bsky.social is out in Nature.
We provide the first single-cell data on neurons infiltrating pancreatic tumors, offering new insights into cancer therapy. #cancerneuroscience @cn-hd.bsky.social
www.nature.com/articles/s41...
New pre-print from Thomas Höfer, Daniel Hübschmann, @haas_lab and myself, with first authors @Esther_RCorrea @FloGrunschlager and Tamar Nizharadze doi.org/10.1101/2025... @DKFZ @NCT_HD @ChariteBerlin @hi_stem_lab BIH & MDC
Stegle Lab
Danai Vagiaki
Anna Mathioudaki
This work presents SUM-seq, an ultra-high-throughput method for co-profiling chromatin accessibility and gene expression in single nuclei across multiplexed samples, advancing the study of gene regula...
