Alright, it's still very much a work in progress, but you can now run resgen locally to view data that's on your machine without uploading to resgen.io.
docs.resgen.io/local/runnin...
resgen.io
spent some time last weekend getting higlass to play nicely inside @marimo.io
molab.marimo.io/notebooks/nb...
Did you know oxbow powers resgen? We use it to load bam and bigwig tiles. Great library!
Small new feature: the ability to collapse tracks to free up space. Thanks to Johan Gibcus for the suggestion!
resgen.io
To get started, install resgen-python, start an instance in any directory, create a user, sync data and open browser:
pip install resgen-python
resgen manage start .
resgen manage create-user
resgen manage sync-datasets
Small but satisfying update over the weekend to (mostly) sync the styling between the main page and docs page:
New year, new home page! Trying to make it easier to get to recently viewed projects and views. Access via the "home" button on the top menu bar when logged in.
Also added a small news feed to highlight recent updates you may or may not have noticed.
Happy new year!!
resgen.io
From there, it's the normal resgen interface except that the current project is the current directory.
If this sounds a lot like the erstwhile higlass-manage functionality, it is because it's modeled after it. Just with more sophisticated directory and metadata handling.
trevor manz
resgen.io
resgen.io
Pssst 🤫... you can also try this live with @genomeinabottle.bsky.social data here:
resgen.io/paper-data/Z...
New higlass-pileup update lets you sort reads by base! Available for use directly in a Juptyer notebook thanks to @manzt.sh. See docs for an example of how to use it:
docs-python.higlass.io/examples.htm...
Video
I'm proud to announce the latest release of 🧬 #Oxbow 🏹, with new features to make NGS data analysis more powerful, efficient, and "composable".
Learn more at: oxbow.readthedocs.io
