Researcher at INRAE - Model construction, statistical inference, and their application to epidemiology, ecology...
BioSP - INRAE - Avignon, France
https://samuel.biosp.org
Samuel Soubeyrand
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Take a First Look at the paper about "Opportunities and Challenges in Combining Optical Sensing and Epidemiological Modelling" by Alexey Mikaberidze et al., very recently published in @phytopathology.bsky.social: doi.org/10.1094/PHYT...
Two axes of the BEYOND project (beyond.paca.hub.inrae.fr) about epidemiological surveillance presented in French (4:30-19:20): natural language processing for knowledge and alerts, and tropolink webapp (doi.org/10.1029/2023...) for long-distance wind-borne dispersal
www.youtube.com/watch?v=PoPG...
Discover the newest release in the Tropolink video series: Uncovering the seasonal routes of a plant-pathogen insect vector: www.youtube.com/playlist?lis... This work made by Margaux Darnis et al. is based on tropolink doi.org/10.1029/2023... / pse.mathnum.inrae.fr/tropolink
Which model should be used? Which explanatory variables should be selected?... Let's use a model ensemble instead of a single model to characterize and predict spatio-temporal disease distributions. Read our ms in @phytopathology.bsky.social with application to virus yellows doi.org/10.1094/PHYT...
Watch the introduction to the new tropolink video series: youtu.be/L7K88Cz-Ezc, and tutorials showing how to use the tropolink webapp to compute air-mass trajectories and the connectivity between distant sites they generate forgemia.inra.fr/tropo-group/.... Ref. in GeoHealth: doi.org/10.1029/2023...
We are pleased to announce the Biology of Vector-Borne Diseases (BVBD) summer school, 1–5 June 2026, France (sister course of BVBD in Idaho). Apply here bvbd-france.workshop.inrae.fr to bridge disciplines (biology, ecology, epidemiology, modeling, policy) and work on real-world wicked challenges.
Explore our bioRxiv preprint where we investigate the contribution of pathogen genetic diversity, climatic variation and their interaction towards disease dynamics, using high resol. sequencing data and multiple analysis techniques (with StrainRanking as a guest tool!). doi.org/10.1101/2024...
New in Mol. Ecol.: integrating multiple data and methods, we show how seasonal fluctuations in pathogen strain composition, diversity and their climate-influenced fitness play a significant role in shaping severity and variability of bacterial disease outbreaks doi.org/10.1111/mec.... #PlantHealth
Samuel Soubeyrand
Samuel Soubeyrand
Samuel Soubeyrand
Samuel Soubeyrand
Interested in fast & non-equilibrium dynamics of within-host pathogen populations? Read our paper just published by @FrontiersIn Microbiology:Associated R code to simulate such dynamics coupling viral kinetics and microevolution:
doi.org/10.5281/zenodo… doi.org/10.3389/fmicb.…
Samuel Soubeyrand
Samuel Soubeyrand
Samuel Soubeyrand
Très heureux d'annoncer que notre ouvrage "Crises sanitaires en agriculture" aux éditions Editions Quae, a remporté le Prix Jacques Delage, décerné par le Comité des prix de l'Académie vétérinaire de France.
www.quae.com/produit/1749...
#Bioinvasions
#Biosecurity
#Agriculture
#Health
High-throughput sequencing has opened the route for a deep assessment of within-host genetic diversity that can be used, e.g., to characterize microbial comm...
Watch the introduction to the new tropolink video series: youtu.be/L7K88Cz-Ezc, and tutorials showing how to use the tropolink webapp to compute air-mass trajectories and the connectivity between distant sites they generate forgemia.inra.fr/tropo-group/.... Ref. in GeoHealth: doi.org/10.1029/2023...
