Please re-circulate. New postdoc position available to study organ positioning in the flower at the University of Sydney. Cell polarity, auxin etc etc! Join our multidisciplinary RESYDE (www2.hu-berlin.de/resyde/) team! Apply here: usyd.wd105.myworkdayjobs.com/en-US/USYD_E...
Heisler Lab
Excited to share our new study on CpG islands (CGIs) regulation by transcription factors (TFs)! CGIs drive most transcription initiation with unclear regulation. We find that chromatin-opening TFs are key players—following a surprisingly simple rule. 🧵 www.biorxiv.org/content/10.6...
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www.biorxiv.org
Schubeler Lab
Exciting news 📣 The first preprint from @grandlab.bsky.social is out 🧬 How are essential genes controlled? By rapid degradation and recovery of TFs alone or in combination, we show that essential genes rely on a single dominant TF, despite dense co-binding. www.biorxiv.org/content/10.6...
www.biorxiv.org
Cell viability depends on the precise expression of essential genes, which are controlled by CpG-island (CGI) promoters densely bound by transcription factors (TFs). This has led to the prevailing model that TFs cooperate to ensure ubiquitous expression. Here, using rapid and reversible single and combinatorial degradation in murine stem cells, we systematically dissect the regulatory interactions between five key TFs. We uncover an unexpectedly specific architecture in which regulatory dominance, rather than cooperation, is the prevailing mode, where individual TFs autonomously drive chromatin opening and gene activation at largely distinct promoters. Cooperative regulation occurs at a minority of sites with antagonistic or synergistic outcomes modulated by the interplay between nucleosome positioning and TF sensitivity to chromatin. This logic is recapitulated at synthetic sequences and reflected in human genetic variation. These findings reveal that single TFs dominantly activate distinct sets of CGI-linked genes, including essential genes, across development, homeostasis, and disease. ### Competing Interest Statement The authors have declared no competing interest. DFG, GR 6341/2-1, 556634773
