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Foundational work in #zebrafish can be credited to "fruitful" discussions between #Drosophila researchers such as José Campos-Ortega & Christiane Nüsslein-Volhard. By the late 1980s, multidisciplinary approaches honed in flies were finally applied to a vertebrate. #ZebrafishFunFacts 🧪
Massive congratulations to our Editor-in-Chief for being elected as a Fellow of the Royal Society @royalsociety.org. This is an incredible honour for our journal. @ucl.ac.uk @ucl-cdb.bsky.social
Ready for the @ucllifesciences.bsky.social Science Fair!! #UCLlifesciences #Futurescientists
2mo
18d
1d
The proposed new government rules for politics-based decision making on federal scientific grants will materially impact my ability to due science in the US: www.federalregister.gov/documents/20... Please reach out to your congress representatives on this: www.linkedin.com/posts/lisa-m...
My postdoc work with @pcusachs.bsky.social is finally out! We find that fibrillar adhesions play an important role regulating the timescales of nuclear mechanotransduction. You can read all about it here : www.nature.com/articles/s41563-026-02590-x Huge thanks to everyone involved!!
1mo
12d
(1/n) Does basal stem cell division orientation regulate skin stratification and tissue mechanics? And can tissue mechanics feed back to control division orientation? In our new preprint, we use a 3D vertex model to explore this @manningresearch.bsky.social @somiealo.bsky.social
1mo
Zebrafish Rock!
Cells & Development
The Office of Management and Budget (OMB) proposes to revise the Guidance for Federal Financial Assistance to improve government- wide policies and requirements related to the management of grants, co...
www.federalregister.gov
Regulation for Federal Financial Assistance
Nuclear deformation and mechano-signalling are regulated by the coupling of vimentin cytoskeleton to the extracellular matrix through fibrillar adhesions, modulating the timescale of mechanotransducti...
www.nature.com
Great work and thread!
Fibrillar adhesion dynamics govern the timescales of nuclear mechano-response via the vimentin cytoskeleton - Nature Materials
26d
www.biorxiv.org
I won't pay $4,000 for a ticket to see my Knicks play in the NBA Finals for the first time in 27 years, but for some reason I routinely pay three times that much for open access to papers that I wrote myself.
Joaquina Delas
Manning Research Group
10d
Rajendra Singh Negi
‼️MASSIVE‼️ congratulations to Professor Roberto Mayor @mayorlab.bsky.social from UCL, who has been elected as a fellow of The Royal Society @royalsociety.org. Professor Mayor is a Professor of Developmental and Cellular Neurobiology and one of our board of directors. royalsociety.org/news/2026/05...
‼️MASSIVE‼️ congratulations to Professor Roberto Mayor @mayorlab.bsky.social from UCL, who has been elected as a fellow of The Royal Society @royalsociety.org. Professor Mayor is a Professor of Developmental and Cellular Neurobiology and one of our board of directors. royalsociety.org/news/2026/05...
How much information does it take to fold a protein? Not much, if you use the right information! We find that residue burial, a binary label of core vs surface, encodes a protein's fold highly efficiently and even improves ESM2's structure representation. 1/8 www.biorxiv.org/content/10.6...
Ale Mongera
2mo
18d
18d
Amy Beedle
Protein structure is controlled by a high-dimensional energy landscape, which is a function of all of the atomic coordinates of the protein. Can this landscape be accurately described by a low-dimensional representation? We find that residue core identity, a binary N-dimensional encoding indicating whether each of the N amino acids in a protein is buried in the core or not, can predict the protein's backbone conformation more efficiently than all other representations that we tested. Core identity is 4 times more efficient than previous estimates of the bits per residue needed to encode a protein's native fold, 2 times more efficient than the Cα contact map, and 1.5 times more efficient than the machine-learned embeddings from FoldSeek's 3Di. Even when the folded structure is unavailable, predicting each residue's burial from sequence yields a more accurate estimate of fold quality than predicting pairwise contacts from the same sequence information. Thus, this work emphasizes that the problem of determining a protein's native fold can be re-framed as predicting each residue's core identity. ### Competing Interest Statement The authors have declared no competing interest. Chan Zuckerberg Initiative (United States), 2023-329572 NIH, T32GM145452
www.biorxiv.org
Residue burial encodes a protein's fold
Oded Rechavi
International Society of Developmental Biology
International Society of Developmental Biology
Alex Grigas
💥 🚀 New preprint! 🎉🥳 How do hundreds of organelles organize themselves into near-perfect patterns inside a cell, without a blueprint? We dive deep into how basal bodies (BBs) self-organize in MCCs - and how actin actively tunes their dynamics into order 🍪 🧵👇 (1/17)
26d
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