Mathematician facing biomedical image processing challenges 💻🔬🧚♂️🦄
https://henriqueslab.org/pages/egdmariscal
@embo.bsky.social fellow at @henriqueslab.bsky.social @aiopticalbiolab.bsky.social
Former @arratemunoz.bsky.social @deniswirtz.bsky.social
Estibaliz Gómez de Mariscal, PhD
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@gomez-mariscal.bsky.social first talk as a PI!!!
Unsurprisingly, she rocked!
Second and very special day at @sigridneuhauser.bsky.social #AI symposium sharing the stage with very close references @florianjug.bsky.social @henriqueslab.bsky.social @ilastik-team.bsky.social 🤩❤️
📍Arrived in Finland🇫🇮 together with @henriqueslab.bsky.social for the @sigridjuselius.bsky.social symposium AI Transforming Life Sciences and Medicine🤖💻🧬🩺
What an honour to share the program with the best! 👾🔬🌈🧫
... and a true excitement to do it as a PI at #NIMSB for the 1st time!💙
Workflow:
🧬 Import structure
🏷️ Choose labelling strategy
🎲 Simulate realistic stochastic labelling
🔬 Generate virtual images for Widefield, Confocal, AiryScan, STED and SMLM
Helping researchers test experiments before collecting data vlab4mic.henriqueslab.org
🔬🚀 It's out! Run 100s of imaging experiments before touching a microscope. #VLab4Mic reproduces them in silico from PDB/AlphaFold to help you image right first time. From rockstars Damián Martínez & Bruno Saraiva, inaugural preprint of @mariodelr.bsky.social new lab
www.biorxiv.org/content/10.6...
Can microscopy distinguish a flat from a domed clathrin lattice?
VLab4Mic predicts:
❌ Confocal
❌ AiryScan
✅ STED
✅ SMLM
A simple example of how simulation can guide modality selection before spending microscope time
Resolution isn't just optics. Structural resolvability also depends on probe size, linkage error, labelling efficiency, steric hindrance and, molecular organisation. VLab4Mic models all of these starting from PDB or AlphaFold structures
How do you know if a microscopy experiment can actually resolve a biological structure?
Introducing VLab4Mic, a platform that predicts structural resolvability before you go to the microscope
Led by Damián Martinez and Bruno Saraiva at @henriqueslab.bsky.social
www.biorxiv.org/content/10.6...
🚨Our #NIMSB PhD fellowship call closes on Friday!
We're recruiting for 5 fantastic PhD projects + welcome applicants from diverse backgrounds: #biologists #computerscientists #physicists #engineers If you want to work on cutting-edge science, we'd love to hear from you 🚀
👉https://sl1nk.com/vog901g
Congratulations to Damián Martinez, Bruno Saraiva, @taylashakespeare.bsky.social, @wmarkbates.bsky.social, Dylan Owen, @christlet.bsky.social and @henriqueslab.bsky.social
We hope VLab4Mic helps researchers design better experiments and ask better biological questions
💻 vlab4mic.henriqueslab.org
Video
Ricardo Henriques
Estibaliz Gómez de Mariscal, PhD
Estibaliz Gómez de Mariscal, PhD
Mario Del Rosario
Ricardo Henriques
A Virtual Laboratory for Microscopy — simulate fluorescence microscopy experiments before stepping into the microscope room.
Second and very special day at @sigridneuhauser.bsky.social #AI symposium sharing the stage with very close references @florianjug.bsky.social @henriqueslab.bsky.social @ilastik-team.bsky.social 🤩❤️
📍Arrived in Finland🇫🇮 together with @henriqueslab.bsky.social for the @sigridjuselius.bsky.social symposium AI Transforming Life Sciences and Medicine🤖💻🧬🩺
What an honour to share the program with the best! 👾🔬🌈🧫
... and a true excitement to do it as a PI at #NIMSB for the 1st time!💙
Congratulations to Damián Martinez, Bruno Saraiva, @taylashakespeare.bsky.social, @wmarkbates.bsky.social, Dylan Owen, @christlet.bsky.social and @henriqueslab.bsky.social
We hope VLab4Mic helps researchers design better experiments and ask better biological questions
💻 vlab4mic.henriqueslab.org
A Virtual Laboratory for Microscopy — simulate fluorescence microscopy experiments before stepping into the microscope room.
📍Arrived in Finland🇫🇮 together with @henriqueslab.bsky.social for the @sigridjuselius.bsky.social symposium AI Transforming Life Sciences and Medicine🤖💻🧬🩺
What an honour to share the program with the best! 👾🔬🌈🧫
... and a true excitement to do it as a PI at #NIMSB for the 1st time!💙
Estibaliz Gómez de Mariscal, PhD
Want to do a PhD in biomedical research and explore the exciting world of AI, microscopy and cell biology?👾🧠🧫🔬 In a research environment of high excellence🌟 and in beautiful Portugal🏄🌸?
PhD fellowships are now open at #NIMSB from May-4 til June-5
👉 APPLY lnkd.in/eqkYreFi
Reach out if interested!✉️
