Wellcome Trust Optical Biology PhD student @ UCL in the Wong Lab // interested in mechanotransduction and dynamic signalling in morphogenesis
Zimeng Wu
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DySTrack is officially published!:
doi.org/10.1242/jcs....
If anyone is keen on using it feel free to reach out as we are more than happy to help and demo if need be!
Pleased to say that Jonas Hartmann (bs-less) and I have finally released DySTrack (“diss track”) - Dynamic Sample Tracking.
It’s a Python-based, modular tool that brings smart microscopy to everyday imaging on commercial systems.
Preprint: www.biorxiv.org/content/10.6...
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Video
Zimeng Wu
Summary: DySTrack is an easy-to-use open-source tool that bridges standard microscope control software with the Python image analysis ecosystem to enable automated tracking of moving, drifting, or gro...
We include example pipelines for:
🐟 migrating zebrafish pLLP
🐟 zebrafish neuromast drift correction
🐣 chick Hensen’s node (pictured)
All easy to adapt to your own system.
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The result:
Your microscope can follow moving or drifting samples on its own with no vendor lock-in, no rewriting control software and no massive frameworks to learn. We provide integration for Zeiss LSM880, LSM980 and Nikon scopes that have JOBS.
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I always get weirdly sad setting up/collecting my fish/embryos for the last time every year and hope that they have a happy holidays too
