Computer Science PhD Student at @humboldtuni.bsky.social and @mdc-berlin.bsky.social | Data Science | Machine learning | AI | Bioinformatics | Genomics | Single-Cell Biology
Pia Rautenstrauch
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Check out my talented colleagues' study, profiling hundreds of CRISPRa-responsive regulatory elements surrounding PHOX2B, a key player in neuroblastoma, using a targeted scRNA-seq screen in a neuroblastoma cell line.
š Applications for the 2026 Leena Peltonen School of Human Genetics are open!
Back after a great 2025 edition: ~20 global leaders and ~20 PhD students shaping the future of genomics.
š July 26ā30, 2026
š Wellcome Genome Campus, UK
š Apply by March 6 ā www.lpshg.com
Thrilled to announce that Iāve just opened my research lab at @helmholtz-hiri.bsky.social !
A huge thank you to my mentor Roi Avraham (and lab members!) for the incredible training and support that made this possible.
š§ The Lipid #Brain Atlas is out now! If you think #lipids are boring and membranes are all the same, prepare to be surprised. Led by @lucafusarbassini.bsky.social with Giovanni D'Angelo's lab, we mapped membrane lipids in the mouse brain at high resolution.
www.biorxiv.org/cgi/content/...
I'm excited to announce we're recruiting a PhD student in Machine Learning for Immunology within the Einstein Center for Early Disease Interception, together with Simon Haas!
We are excited to share GPN-Star, a cost-effective, biologically grounded genomic language modeling framework that achieves state-of-the-art performance across a wide range of variant effect prediction tasks relevant to human genetics.
www.biorxiv.org/content/10.1...
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How many high-impact developmental variants are we missing by relying only on adult splicing annotations?
We address this in our preprint āAberrant splicing prediction during human organ developmentā: www.biorxiv.org/content/10.1...
There is the obvious fraud potential, but I think something much more fundamental is going to happen, too. It will change the meaning of what a "research publication" is. The reason why people read papers is to learn something that they couldn't reproduce in seconds by pushing a few buttons.
I did not know Taylor Swift was moonlighting in soliciting contributions for fake journals!
Our first Fall #tidyomics meeting will be this Wed 10 September, early in US / noon in Europe / late in Australia. Feel free to join if you're interested in what we are doing to make omics data more amenable to tidy data analysis.
Organized with Stefano @stemang.bsky.social
Pia Rautenstrauch
Andrea Ganna
Camilla Ciolli Mattioli
This link will take you to a page thatās not on LinkedIn
I am so happy to share that our paperis officially published in Cell Genomics! In this paper, we describe TESLA-seq, which combines pooled CRISPR activation with targeted single-cell RNA-seq to map enhancer-gene connections at high sensitivity.
Link to the full story: www.cell.com/cell-genomic...
Lisa Buchauer
Yun S. Song
Wolfgang Huber
Constantin Pape
Michael Love
OpenAI just released Prism, a LaTeX editor with embedded ChatGPT for free.
Writing a paper has never been easier.
Clogging the scientific publishing pipeline has never been easier.
It took me 54 seconds to write up an experiment I did not actually conduct.
prism.openai.com
