Head Research Engineer at Sainsbury Wellcome Centre, UCL. I lead @neuroinformatics.dev & @brainglobe.info. We build open source software for neuroscience and machine learning.
Runner, cyclist, sandwich enthusiast.
https://adamltyson.com
Adam Tyson
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New method for identifying the fine transcriptomic types of thousands of neurons recorded in vivo!
Fantastic to see @brainglobe.info recognised. Thank you to everyone who's helped build it, and thank you to the RMS.
Kenneth Harris
We've started an effort to bring every 3D (non-human) anatomical atlas that exists into BrainGlobe.
Get in touch if there's an atlas we've missed, or you think there's a specific atlas we should prioritise.
Read more in our blog:
brainglobe.info/blog/the-sys...
Adam Tyson
Together with @roozbehkiani.bsky.social and @athenaakrami.bsky.social, we published a Nature correspondence highlighting our open letter’s core message: the academic community must speak out against attacks on academic institutions.
doi.org/10.1038/d415...
Open access version:
rdcu.be/fju9B
v0.17.0 of movement released! 🧠🧪
This version includes new path analysis functions along with a number of bug fixes.
Importantly there are some small breaking changes, so please read the release notes to see how your code may be affected.
More details: github.com/neuroinforma...
Introducing driftplots—a tool for creating customisable, interactive drift maps from Kilosort or @spikeinterface.bsky.social output.
Read more: driftplots.neuroinformatics.dev
Great writeup from our collaborators at UCL Advanced Research Computing on our joint work to make building novel 3D brain atlases faster, more reproducible, and accessible to more labs. 🧠
www.ucl.ac.uk/advanced-res...
As part of this effort, we've just released three new atlases from v2 of the Allen mouse CCF - the brain atlas, fiber tract atlas and developmental brain atlas.
Most pipelines have moved to CCFv3, but adding v2 allows atlas comparison and reproducing old analyses.
brainglobe.info/blog/ccfv2-a...
