Building genomic intelligence
Metagenomic datasets, genomic language models, SeqHub
Our research: https://tatta.bio
Analyze your sequences on https://seqhub.org
Tatta Bio
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Their datasets are now published and searchable on SeqHub, making the course itself a contribution to open science.
seqhub.org/ccgoller/col...
SeqHub is free for academic use. If you're designing a course around sequencing or genome annotation, reach out at [email protected] to talk through how to integrate it.
Our Chief Scientist @microyunha.bsky.social is speaking at FOG tomorrow!
Catch her talk on Genomic Language Modeling for Sequence Analysis and Management in the Age of AI at 12:30pm at the Biopharma Data Management Stage.
We'd love to connect at ASM Microbe in D.C.!
Stop by booth 2324 to learn more about our research or talk through how SeqHub could support your work.
With the SeqHub API (now in beta), you can infer function for hypothetical proteins, identify gene clusters, and reconstruct putative pathways in uncharacterized organisms. Each query pulls from 130,000+ microbial genomes.
Request a token from your Dashboard.
Docs: docs.seqhub.org/introduction
ASM Microbe starts today. We're at booth 2324, next to the Applied and Environmental Microbiology Hub.
Come find Andre, Yunha, and Steph if you're curious to learn more, provide feedback, or just say hello!
Link to book time in advance: calendar.app.google/yJSznU5UVacv...
The SeqHub API (beta) is free for non-commercial use.
You can start querying today, and for throughput beyond the current beta limits, reach out at [email protected].
We look forward to hearing your feedback!
Docs: docs.seqhub.org/introduction
Last semester in MB 360: Scientific Inquiry in Microbiology at the Bench, a course designed by Dr. Carlos Goller and Camila Loyola, student teams extracted DNA, sequenced with Nanopore and Illumina, assembled genomes, and used SeqHub to annotate what they had assembled.
seqhub.org/blog/nc-stat...
