OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
https://www.openmicroscopy.org/
OME
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Idr0167: Predicting cell cycle stage from 3D single-cell nuclear-stained images from www.life-science-alliance.org/content/8/6/... by Li et al. idr.openmicroscopy.org/search/?quer...
Idr0171: Experimental and machine learning-based exploration of repurposed drugs reveals chemical features underlying phospholipidosis from www.sciencedirect.com/science/arti... by Kuzikov et al.
idr.openmicroscopy.org/search/?quer...
Excited to see direct streaming of @openmicroscopy.org @zarr.dev datasets in #syGlass!
Exploring huge images without upfront download is just what we’ve been working toward with cloud-optimized formats.
Great to have tools connecting the ecosystem of imaging repositories, now including VR 🙌
Help shape the future of @openmicroscopy.org! 🔮
The OME 2026 community survey is open—tell us what’s working, what isn’t, and what you'd like to see next.
Takes just a few minutes 👇
forum.image.sc/t/ome-2026-c...
Two new studies available in the Image Data Resource (IDR, idr.openmicroscopy.org). Plus, IDR welcomes a new organism - the African green monkey!
We have integrated the Allen Institute's BioFile Finder app with IDR. You can quickly Group and Filter all images in a study. Data is served by the IDR search engine and supports up to a million images at a time. BioFile Finder links are on each study page e.g. idr.openmicroscopy.org/study/idr0056/
#OME2026 has come to an end—what an inspiring and collaborative few days.
Huge thanks to @nfdi4bioimage.bsky.social for documenting the meeting so thoroughly—definitely worth a look back through their posts!
But first, enjoy the wrap-up video presented already during the closing session! 🤩
One week left for the OME2026 Community Survey! 📣 If you haven't filled it out, please do so. We'll be discussing it live at the #OME2026 meeting in April.
bit.ly/ome2026-comm...
Dear all
Today we are releasing Bio-Formats 8.4.0 which includes a new file format as well as several fixes and improvements.
The full list of changes included in this release is on www.openmicroscopy.org/2026/01/15/b... Please use image.sc in case of questions or problems.
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Josh Moore
Calling all OME Community members, contributors, and lurkers! This year in April, the 19th OME Community Meeting will be gathering to determine the "Future and Governance of OME" during the final mee...
This year in April, the 19th OME Community Meeting will be gathering to determine the "Future and Governance of OME" during the final meeting day's guided Discussion Forum / "Unmeeting".
This survey...
#OME2026 is coming to an end. It has been a truly welcoming, motivating, and inspiring experience full of intensive exchange and shaped by an exceptionally open and collaborative spirit.
Grateful for the many insightful discussions, new connections, and shared ideas.
Thank you!
Video
Streaming OME-Zarr data directly into syGlass for #3DThursday🌍🔬
With #syGlass v2.6.0, datasets can stream from disk, S3, or HTTPS with no massive downloads required.
Huge thanks to the community building open imaging standards:
@openmicroscopy.org
#OMEZarr #Microscopy #OpenScience #Bioimaging
