Interesting discussion here: analyst-analyst variability of analysis results.
forum.image.sc/t/does-imari...
Miguel A. Ibarra Arellano reporting the Hackthon@GloBIAS conference Kobe 2025: focalplane.biologists.com/2026/04/01/h...
A great paper from Stefania Marcotti et al
Practical statistics for bioimage analysis – a guide to experimental design and data interpretation | JCS
journals.biologists.com/jcs/article/...
#GloBIAS #BioimageAnalysis
Kota Miura
One week left to register to the Bioimage Analysis with AI course in Pasteur!
This June, 1 - 5.
I give a bit more details in the thread below
👇
Introducing the Anthropic Science Blog. Increasing the pace of scientific progress is a core part of Anthropic’s mission. The Science Blog will feature new research and stories of how scientists are using AI to accelerate their work. Read the intro:
Summary: You've analysed some images, but is the result significant? Is it reproducible? Through reanalysis of published image data, this Perspective offers practical guidance on experimental design a...
In the #BigVolumeBrowser news, there is a new awesome video tutorial about it made by certified magician Johanna M. Dela Cruz.
Check it out: www.youtube.com/watch?v=c0fr... (1/2)
Kota Miura
Kota Miura
The paper is now published in Current Protocols!!
🎉🥳
currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1...
Some personal story below 👇 , and technical details in the linked post that featured the preprint 👉
📣We’re back 🔬👀🖥️!
#CBIAS2026 returns 23–24 November 2026:
Join the bioimage analysis community to discuss advances in quantitative imaging & computational methods for image analysis. Great opportunity for early-career analysts & microscopists to present and connect.
#CBIAS2026 #BioimageAnalysis
Is this bad
Rewrote my Python bioformats wrapper (from aicsimageio/bioio) as a standalone package:
- fully bootstrapped Java setup (just pip install)
- lazy, repeatably-indexable Array object
- fully spec-compliant OME-Zarr group obj.
- xarray/dask exports
github.com/imaging-form...
v0.0.rc1 on PyPI
Einstein logs into Canvas and does your homework automatically. He has his own computer — he can watch lectures, read essays, write papers, and participate in discussions.
Hi @bcimini I wouldn’t fully rely on these numbers yet, as I still need to clarify a few details with the original authors and make sure there isn’t something I’m overlooking. So far I haven’t been a...
Quantitative analysis of bacterial dynamics in time-lapse microscopy requires robust tracking pipelines, yet selecting and optimizing algorithms for specific experiments remains challenging. Indeed, ...
⚠️ 1 week left for Pasteur Course "Advanced Bioimage Analysis With AI"! 👩🔬💻
Intensive course (June 1-5, Paris): theory + hands-on, AI focus in bioimaging.
📍 Institut Pasteur
🗣️ English
⏰ Deadline: March 1
🔬 Beginner basics, batch scripts, interactive sessions
👉 Apply: https://bit.ly/4c8rFKZ
New preprint alert!
We developed an automated framework to optimize tracking pipelines for bacteria, along with a nice integration of tools for bacteria imaging, in the recently released TrackMate 8 (Fiji plugin).
www.biorxiv.org/content/10.6...
👇🧵
Modern Bio-Formats wrapper with clean lazy Python API - imaging-formats/bffile
