Bridging environmental science and real-world applications | Junior lecturer @ UNIL | Postdoc @ MIT | PhD @ ETH. Climate and bio based solutions. Author of 7 books, winner of two book prize.
Davide Ciccarese
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Some data visualization here:
Here is the repository. Any feedback, comments, or suggestions are very welcome:
github.com/davideciccar...
Just for fun. A classic of microscale ecology: Mark Welch et al. 2016. From FISH microscopy to computational reconstruction of the oral plaque hedgehog biofilm: reaction-diffusion gradients, agent-based coaggregation assembly, and a dynamic 3D oxygen and metabolite solver. GitHub repo 👇
This is the original picture used to create the computational reconstruction. The purpose of these simulations is solely didactic, and they have some limitations.
Dynamic succession with coupled fields: O₂, CO₂, and lactate. The beauty of species succession and microscale self-engineering: microbial communities shape entire ecosystems, one micrometer at a time.
Davide Ciccarese
Davide Ciccarese
Davide Ciccarese
Davide Ciccarese
Happy to share our brand-new toolset for growth data analysis! This includes a python package and two apps for the analysis of data from plate readers (MicroGrowth) and mini-bioreactors (AutoGrowth). Everything is free and open-source. Link to the apps: biosustain.github.io/growthcurves...
Computational reconstruction of the oral plaque hedgehog biofilm: reaction-diffusion gradients, agent-based coaggregation assembly, and a dynamic 3D oxygen and metabolite solve. - davideciccarese/H...
by Christoph — If someone told you that your mouth harbors roughly 700 different bacterial species you might think "that's gross!" but you'd probably just say "Ooh!". Wait! Please, keep your mouth…
