ML for Biosystems Engineering. dev bio. organoids. single cells @IHB
jonas
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🚀Excited to start as Group Leader at the Institute of Human Biology in Basel!
We want to accelerate organoid engineering, large scale screening & drug discovery with modern ML methods. Really looking forward to collab with great exp groups and work with complex & rich data from organoids.
Yeah, actually, why?
Also, we're hiring. So if this sounds interesting to you, please reach out! Curious to hear about your research interests
Thrilled to share our Human Endoderm-derived Organoid Cell Atlas (HEOCA). We compare organoids with primary tissues, assess culture strategies, and explore disease models. In collaboration with Lennard Halle, supervised by
@graycamplab.bsky.social, @fabiantheis.bsky.social & @TreutleinLab. @IHB.
The first two integrated HCA Organoid Cell Atlases, from brain and endoderm tissues, are available on the HCA Data Portal. Congratulations to all involved! 🖥️ 🧬 data.humancellatlas.org/hca-bio-netw...
One thing that really bothers me with the new "virtual cell" terminology is that it is currently largely focused on a very narrow definition of models that can predict effects of trans perturbations (gene dosage, drugs etc) on gene expression. 1/
Yes yes I know. Most science has been hypey forever. But it's hyperaccelated now with this weird meld of academic science & startup culture + social media and highly skilled amplification by marketing & PR teams. 3/
Our new call for VIB.AI group leaders is online! Junior and senior positions available to develop innovative ML methods in biology. With professorship at CS or Medical Faculty. Deadline 14th June. DM for more info.
