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by @danabra.mov
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by @danabra.mov
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by @jimpick.com
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by @atsui.org
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Noor (@noorpratap.bsky.social) has been working on this for quite some time! It took a bit of work to figure out, but now you can map your scATAC-seq reads directly to the genome and sort and dedup them with alevin-fry-atac. You get a BED file with counts ready for downstream analysis! 1/
Dec 2, 2024
Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic pseudoalignment https://www.biorxiv.org/content/10.1101/2024.11.27.625771v1
Rob Patro
Dec 2, 2024
Ultrafast mapping of short reads to transcriptomic and metagenomic references via lightweight mappin
www.biorxiv.org
Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic pseudoalignment https://www.biorxiv.org/content/10.1101/2024.11.27.625771v1
bioRxiv Bioinfo