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Pathogen informatics and modelling http://bacpop.org (Research group leader at EMBL-EBI - http://ebi.ac.uk/research/lees/)
John Lees
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We evaluated these AI models to classic bioinformatics methods for these tasks, which I think is important! It can look impressive to compare to a smaller model or different dataset and do very well on a task, when actually a simple informatic approach (e.g. sketching) does even better
1mo
John Lees
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Our new preprint is out! We train a transformer on gene order and gene content of bacterial pathogens, applying it to a range of epidemiological and evolutionary analyses (1/8) www.biorxiv.org/content/10.6...