Postdoc at @mpimicrobiomarburg.bsky.social. Decoding how #methanogens make #methane & its climate impact. Alumnus @unimarburg.bsky.social, @daadworldwide.bsky.social, #Fulbright. He/him, #firstgen 🦠🧬🤓🏳️🌈🐈⬛🎤
https://www.linkedin.com/in/evgenii-protasov/
Evgenii Protasov
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Gene ancestries reveal diverse microbial associations during eukaryogenesis
#eukaryotes #prokaryotes #viruses #evolution #MicroSky
@nature.com
doi.org/10.1038/s415...
I'm happy to share the first pre-print of out Lab! 🎉
Introducing ArchaeaHQ
www.biorxiv.org/content/10.6...
We curated 21,644 genomes across all 4 archaeal kingdoms to bridge the gap in public datasets for computational biology
What is inside ArchaeaHQ... (1/2)
I'm looking for an enthusiastic student to join my team as a PhD candidate on archaeal genome evolution 🦠💻
Work in beautiful Utrecht, at @binfutrecht.bsky.social, an international group full of caring, amazing scientists, and with frequent cake breaks!
www.uu.nl/en/organisat...
Please share! 🙏
Polyphosphate affects the growth and methanogenesis of deep-sea methanogenic archaea
#microbiology #methanogens #methanogenesis #MicroSky #ArchaeaSky
@pnas.org
doi.org/10.1073/pnas...
The microbial nexus: linking arsenic biogeochemistry with greenhouse gas emissions
#microbiology #ClimateChange #arsenic #methane #MicroSky
doi.org/10.3389/fmic...
A Novel Freshwater Anammox Species of Candidatus Loosdrechtia Thriving Under Dual Salinity and Sulfate Stresses
#microbiology #anammox #nitrogen #MicroSky
pubs.acs.org/doi/abs/10.1...
Large-scale comparative genomics of chitin metabolism in extremely halophilic archaea from the Halobacteria class
#microbiology #archaea #extremophiles #halophiles #MicroSky
doi.org/10.1007/s007...
A fixed methane filter maximizes freshwater emissions under warming
#methane #methanogens #methanotrophs #ClimateChange #MicroSky
@natclimate.nature.com
doi.org/10.1038/s415...
Signatures of gene transfer in the parallel evolution of osmotrophic specialization in eukaryotes
#evolution #eukaryotes #MicroSky
@natecoevo.nature.com
doi.org/10.1038/s415...
Scientific Reports - Multiplexing antibiotic screening assay in droplet microfluidics
Chitin is the second most abundant polysaccharide and can serve as a carbon and nitrogen source for microorganisms in various ecosystems, including hypersaline environments. However, chitin metabolism in extremely halophilic archaea of the class Halobacteria has not been systematically analyzed, and the pathways of N-acetylglucosamine (GlcNAc) utilization in these organisms remain poorly understood. In this study, we performed a large-scale comparative genomic analysis of the class Halobacteria to assess prevalence and organization of genes, presumably involved in chitin utilization. Potential chitinolytic species are unevenly distributed across the class Halobacteria and tend to cluster within only 7 out of its 117 recognized genera. Glycoside hydrolases from GH18 and GH3 families were found as predominant endochitinases and β-hexosaminidases, respectively. Most putative chitinolytic haloarchaea lacked the genes involved in GlcNAc catabolism in bacteria and hyperthermophilic archaeon Thermococcus kodakaraensis. However, many of them harbor enzymes of pathways previously proposed for Natrarchaeobius and nanohaloarchaeon Ca. “Nanohalobium constans”. Analysis of gene neighborhoods demonstrated a conserved organization of the gene clusters associated with chitin metabolism in some genomes, resembling the clusters previously described for Natrarchaeobius species. Overall, our results indicate that Halomicrobium, Natrarchaeobius, Natrialba, Saliphagus, Halocatena, Haladaptatus, and Salinarchaeum genera are enriched in species with chitinolytic potential.
doi.org
How the balance of microbial methane production and oxidation in freshwater systems will change with warming is unclear. This study uses natural warming experiments to demonstrate that methane emissio...
Anaerobic ammonium oxidation (anammox) bacteria are key players in the global nitrogen cycle and are widely applied in energy-efficient nitrogen removal processes. However, their activity is often inh...
Comparative genomics of 86 eukaryotic species reveals a shared genetic toolkit enriched in metabolic functions among osmotrophs that was shaped by early horizontal gene transfer and more recent transf...