In onlinelibrary.wiley.com/doi/full/10.... Pol & Ezcurra present a fully scripted (TNT & R, incl. publication-ready graphics) #parsimony based workflow for estimating rates. It deals with ambiguous optimizations and multiple MPTs and can use different calibration approaches. Nice work! #phylogeny
onlinelibrary.wiley.com
We describe a protocol for estimating evolutionary rates from phylogenetic trees based on parsimony character optimization. The rate estimation is conducted through a TNT script and the results are a...