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Biophysics, cytoskeleton and self-disorganization
Eugene Katrukha πŸ‡ΊπŸ‡¦









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The Thermo Fisher situation keeps getting worse. We've now collected 450+ problematic images presented as verification data in TF's antibody catalog. This includes: πŸ–ŒοΈ Dozens more images with duplications or painting πŸ–¨οΈ Hundreds of blots that all share the same background (behold slideshow below)
Very excited to be sharing our new paper, just out in Nature Cell Biology! The big question we investigate: How do migrating cells put their front πŸ”΄ and back πŸ”΅ in the right place?
5d
17h
Video
Video
Updated #KymoResliceWide plugin with an option to subtract minimum/average/median value (transverse to line). Now with an extra clarity option.
Finished GRIS today. Wow, what a beautiful game, more like an art experience.
Henry De Belly
Reese Richardson
7d
14d
Hello #world, meet 1,000Γ— Expansion Microscopy. A small gel would grow to the size of an Olympic swimming pool, while amino-acid-scale distances become visible with ordinary light microscopy. Led by Helena Hu from @eboyden3.bsky.social's lab, in collab with us. Story: www.biorxiv.org/content/10.6...
Another outcome from the Appose processing hackathon: Cellpose simple tile processing in Fiji, with #imglib2 and #appose only. With @gaellel.bsky.social and @strigaud.bsky.social
9d
Gris #PixelArt #Pixelorama
The paper is now published in Current Protocols!! πŸŽ‰πŸ₯³ currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1... Some personal story below πŸ‘‡ , and technical details in the linked post that featured the preprint πŸ‘‰
Saishree S. Iyer and Anna Akhmanova @utrechtuniversity.bsky.social review the mechanisms controlling plus-end elongation of centriolar and ciliary #microtubules, revealing shared principles. rupress.org/jcb/article/... #Centrioles #Cilia #Cytoskeleton
πŸ”¬πŸš€ Preprint update for #VLab4Mic - our super-resolution experiments virtual simulation system. Now installs as one-click desktop app: no Python, no setup, thanks to the magic of the @guijacquemet.bsky.social's lab #LabConstrictor packaging engine www.biorxiv.org/content/10.64898/2026.06.02.729521v2
Eugene Katrukha πŸ‡ΊπŸ‡¦
13d
Eugene Katrukha πŸ‡ΊπŸ‡¦
1mo
Video
14d
15d
1d
Video
Ali Shaib
Quantitative analysis of bacterial dynamics in time-lapse microscopy requires robust tracking pipelines, yet selecting and optimizing algorithms for specific experiments remains challenging. Indeed, ...
currentprotocols.onlinelibrary.wiley.com
Automated Optimization of Bacterial Tracking Pipelines With TrackMate 8
Lay
Journal of Cell Biology
Jean-Yves Tinevez
Jean-Yves Tinevez
Ricardo Henriques
New preprint alert! We developed an automated framework to optimize tracking pipelines for bacteria, along with a nice integration of tools for bacteria imaging, in the recently released TrackMate 8 (Fiji plugin). www.biorxiv.org/content/10.6... πŸ‘‡πŸ§΅
4mo
Excited to share my first PhD project: LabConstrictor πŸ“’πŸ Have you ever created a Jupyter notebook with all your love 🫢, only for others to be unable to install it πŸ₯²? LabConstrictor, comes to solve this! Check out how it works in the preprint πŸ”— arxiv.org/abs/2603.107... or follow this thread ⬇️
2mo
Video
www.biorxiv.org
Jean-Yves Tinevez
IvΓ‘n Hidalgo-Cenalmor