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Sharing publications of the @puckerlab.bsky.social‬ about #Genomics #Bioinformatics #Evolution #SpecializedMetabolism. Full list: https://www.izmb.uni-bonn.de/en/pbb/publications

PuckerLab publications

Interested in getting the genome sequence of your favourite plant? "Cookbook for plant genome sequences" doi.org/10.1186/s128... #Genomics #PlantSciences #Bioinformatics @puckerlab.bsky.social

21d

Please share with your network: Would you benefit from full plasmid sequencing? Check out this cost-effective solution via nanopore sequencing on old flow cells: doi.org/10.64898/202... #LongReads #Biotech #SynBio #Plasmids #iGEM @puckerlab.bsky.social @bpucker.bsky.social

Planning to sequence the genome of your favourite plant? This workflow based on ONT sequencing comes with hands-on instructions: "Cookbook for plant genome sequences" doi.org/10.1186/s128... #Genomics #LongReads #PlantSciences #Bioinformatics

Have you ever touched Urtica dioica? It is a memorable experience. Beyond its sting, this plant has medicinal properties. To better understand the genetics underlying key traits, we sequenced and analyzed its genome: doi.org/10.64898/202... #Genomics #PlantScience @puckerlab.bsky.social

Near-black flowers of Tacca chantrieri are connected to anthocyanin genes including a curious DFR twist #FlavonoidFriday doi.org/10.64898/202... & shorturl.at/SnbhQ @puckerlab.bsky.social

We are looking for a new group member (BSc/MSc student) to bring our full plasmid sequencing data analysis workflow (NanoPlasmiQC) to the next level: www.izmb.uni-bonn.de/en/pbb/news#... #Python #Genomics #LongReads #Biotech #SynBio #Bioinformatics @puckerlab.bsky.social

1mo

28d

1mo

PuckerLab publications

🌾🧬A practical cookbook for plant genome sequencing. Oxford Nanopore workflows. From project planning to data release. Helping newcomers enter the growing field of plant genomics. #plantscience @bpucker.bsky.social @puckerlab.bsky.social @puckerlabpapers.bsky.social link.springer.com/article/10.1...

Long-read sequencing has shown a rapid technological development during the last years. It has been established as the standard method for the sequencing of plant genomes and has also gained importanc...

doi.org

NanoPlasmiQC: Full plasmid sequencing with ONT long-reads and automatic data analysis

🧬 New paper! DupyliCate provides an automated solution for the identification and characterization of gene duplications. 📄 doi.org/10.1038/s415... #Bioinformatics #Genomics @shakunthalan.bsky.social @bpucker.bsky.social

21d

PuckerLab publications

Dark pigmentation of blackberry can be explained by high amounts of cyanidin-3-O-glucosides #FlavonoidFriday doi.org/10.64898/202... & shorturl.at/bxQU9 @puckerlab.bsky.social

Boas Pucker

BMC Genomics - Access to genome sequences is crucial to investigate and engineer traits in plants, explore biodiversity, and support phylogenetic studies. Over the last decade, affordable...

link.springer.com

Cookbook for plant genome sequences - BMC Genomics

11d

DupyliCate: mining, classifying, and characterizing gene duplications - Scientific Reports

Scientific Reports - DupyliCate: mining, classifying, and characterizing gene duplications

doi.org

Boas Pucker

Global Plant Science Spotlight

PuckerLab