Our paper "Gene ancestries reveal diverse microbial associations during eukaryogenesis.” is finally out in Nature.
Eukaryogenesis was likely a gradual process shaped by multiple microbial partners and virus-mediated gene transfer, rather than a single binary symbiosis.
doi.org/10.1038/s415...
The new OrthoFinder paper is out now!
In this new work, we introduce major advances in accuracy and scalability, allowing analysis on much larger datasets
www.nature.com/articles/s41...
github.com/OrthoFinder/...
Where the tree of life is empirically resolved, and where it is not: an open atlas of species-level phylogenies and their archival uncertainty https://www.biorxiv.org/content/10.64898/2026.05.31.729127v1
The updated OrthoFinder v3 software boosts accuracy and scalability in phylogenetic orthology inference with massive and diverse datasets.