Mats Nilsson's team at Stockholm University and Scilifelab, researching molecular diagnostics and in-situ spatial transcriptomics
Mats Nilsson's Lab
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New work from our @mgrillo.bsky.social with @lgmartelotto.bsky.social and others. Capture somatic mutations in single-cell assays via RNA-targeted gap filling. Check it out!
Colorful dots on the ceiling as we celebrated Anastasia Magoulopoulou's defense last month, "Dissecting molecular signatures using padlock probes for deciphering pathological states".
Recent work led by our great @sergiomarcosalas.bsky.social, highlighting best practices and critical considerations when analyzing and interpreting @10xgenomics.bsky.social Xenium datasets.
@agustinrobles.bsky.social writes here on the many reasons why spatial omics assays will need to integrate miRNAs.
A study from @sergiomarcosalas.bsky.social @nilssonlab.org and colleagues presents a comprehensive evaluation of Xenium in situ datasets and provides recommendations on analysis workflows. @scilifelab.se
www.nature.com/articles/s41...
🔬🧬🔍 If you're interested in spatial omics and miRNAs, don’t miss our latest review!
We explore where the early field of spatial miRNomics stands, what’s missing, and why incorporating miRNAs matters for building richer spatial transcriptomic maps.
#SpatialOmics #miRNA #GeneRegulation
New paper alert! Led by the great Fernando Garcia Moreno, our lab's first venture into evolutionary developmental biology is out on @science.org
www.science.org/doi/10.1126/...
Our latest work is now live on bioRxiv! We use copy number variation inference to uncover tumor clonality from imaging-based spatial transcriptomics data. Check it out: doi.org/10.1101/2025...
We're looking for a PhD student!
Join the team to develop new technologies for targeted spatial omics.
More info and instruction on how to apply at the following link:
su.varbi.com/what:job/job...
Do you work with a strange model species and are frustrated by the lack of antibodies for immunos? Here's a web app that does some computational pre-screening for you.
sixpack-abscan.serve.scilifelab.se
