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Professor @ University of Melbourne, Australia Microbial bioinformatics, genomics, software, clinical and public health microbiology https://tseemann.github.io
Torsten Seemann
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www.pnas.org/doi/10.1073/... If you ever need lto be convinced by how bad the "Contributed by" track is at @pnas.org ... Only author: David Lipman, handling editor: David Lipman. Only integrity-free person not embarrassed by such a paper: David Lipman. Even uses "I did" in the abstract. Shameful.
2mo
The US broiler production system processes over 9.3 billion chickens annually through a highly integrated pyramid structure where two primary breed...
www.pnas.org
Genomic epidemiology of Salmonella and Campylobacter in poultry production: Quantifying the contribution of primary breeders | PNAS
Dutchscientist (the real one)
Joining the All-The-Bacteria project provides an annualised return on investment of 8.9% bacterial genomes.
It was only a matter of time Google Gemini added music to its image and video offerings... gemini.google.com/app
3mo
3mo
Excited to discover that two of my software tools (Shovill & Snippy) were used to assemble the genome of the #Hantavirus Andes Chile-9717869 strain. #bioinforbioinformatics #genomics #microbiology www.ncbi.nlm.nih.gov/nuccore/MT95...
I used it to create a microbial bioinformatics G-Funk 90's rap snippet 😆 gemini.google.com/share/1df0e1...
1mo
3mo
Torsten Seemann
Torsten Seemann
Torsten Seemann
Torsten Seemann
Very interesting read. www.asimov.press/p/bioinforma... (Thanks to @torstenseemann.bsky.social for sharing over on the #ABACBS slack)
@wytamma.bsky.social 's WASM tools have transformed my experience of teaching Python to first year undergraduate biologists this year. Since last year, I've been teaching ~400 undergrads how to code (functions, lists, dictionaries, loops) over (one hour intro lecture +) two 2-hour practicals. 1/n
2mo
3mo
Can't wait to release a 10-year-old birthday version for SeqKit! - 10 years - 2 papers, 3500 citations - 20 contributors - 40 subcommands - 880 commits - 500 issues - 685.5K Bioconda total downloads Thank you all, dear contributors and users! I'll keep maintaining it. github.com/shenwei356/s...
3mo
For more information and to pre-register: training.galaxyproject.org/training-mat... @galaxyproject.bsky.social @galaxytraining.bsky.social
28d
A LaTeX package to add coffee strains to your documents😆 framagit.org/Pathe/coffee...
4mo
Torsten Seemann
Zamin Iqbal
Wei Shen 沈 伟
Bérénice Batut
Created with Gemini
gemini.google.com
‎Gemini - direct access to Google AI
Courtesy of @martibartfast.bsky.social , we have a new release of AllTheBacteria which adds another 322,920 assemblies, covering all ENA (illumina, isolate) prokaryotes to May 2025. allthebacteria.readthedocs.io/en/latest/ov...
3mo