New paper in mSystems! ๐งต - how much of your metagenome is actually bacterial/archaeal DNA? For many samples, nobody knows.
We built SingleM prokaryotic_fraction (SPF) to answer this, then ran it on >100,000 public metagenomes. ๐งฌ๐ฅ๏ธ๐ฆ
Here's what we found ๐
doi.org/10.1128/msystems.01062-25