Features:
• Automatic iteration detection and iteration subsetting
• Terminal-based plotting
• Multiple variable support
• Overlay mode for comparing variables
• No dependencies beyond the Python standard library
Ben Cooper
Would you expect that Bacteria use an archaellum for swimming? We didn't, but we found that some Chloroflexota do! Find the story here: www.biorxiv.org/content/10.1...
A little thread below 1/n
New preprint 🚨: with @madejmar.bsky.social we found that the Bacteroidetes beta-barrel assembly machinery is quite different to E. coli. www.biorxiv.org/content/10.1... #cryo-EM
OUT NOW: KorB is a DNA clamp which slides along DNA to mediate long-range gene silencing upon interaction with the clamp-locking KorA protein
by Tung Le & co @johninnescentre.bsky.social
www.nature.com/articles/s41...
I've just released a small open-source utility for RELION users: relion_tracker.
RELION stores a lot of useful information in the *_optimiser.star files, but I often found myself repeatedly grepping STAR files to see how metrics were changing across iterations.
It's a small project, but hopefully useful for others running RELION jobs.
GitHub: github.com/bfcoop/relio...
Feedback and feature suggestions are very welcome!
#CryoEM #RELION #StructuralBiology #OpenSource
Ben Cooper
relion_tracker provides a lightweight way to extract and visualise optimiser STAR variables directly in the terminal, with support for multiple variables and overlay plots.
Sonja-Verena Albers
Track metrics from RELION optimiser STAR files directly in the terminal. - bfcoop/relion_tracker
