Still at AMLD in Lausanne today. If you’re around, let’s have a coffee! Also, we (Cradle) and our collaborators from Adaptyv are hosting a little conference after party. Stop by!
Interestingly, our submission initially ranked between 300-600 on the competition leaderboard due to in-silico scoring mechanics that didn't normalize for sequence length.
This highlights a crucial point: in-silico scores don't always tell the whole story when evaluating generative methods!
EuroMLSB at EurIPS is confirmed and the submission deadline is set to Oct 1st. This is **earlier than the EurIPS-suggested workshop deadline** for a reason: we have a shared submission process with MLSB in SanDiego for which the deadline is now also extended to Oct 1st!
Real-world example on how targeted protein sequence engineering can significantly outperform structurally informed de novo design. I strongly believe both methods have their place. This challenge by #AdaptyvBio was a good example of optimization>design.
www.cradle.bio/blog/adaptyv...
🧬 I'm looking for a new colleague (machine learning researcher) to work on exciting research projects around protein engineering with our ML team in Zurich. Speaking from experience, this is an amazing gig!
jobs.ashbyhq.com/cradlebio/92...
Deadline extended - last chance, second edition!
We trained a genomic language model on all observed evolution, which we are calling Evo 2.
The model achieves an unprecedented breadth in capabilities, enabling prediction and design tasks from molecular to genome scale and across all three domains of life.
🚀 It's time for a new JAX ecosystem library!
This time quite a small one: ESM2quinox. A #JAX + Equinox implementation of the ESM2 protein language model.
GitHub: github.com/patrick-kidg...
SciML is obviously my whole jam. My open source has largely focused on the differential equations ...
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Amelie Stein
Brian Hie
Hosted by EurIPS MLSB workshop organizers. RSVP below ⬇️
luma.com/e0avnsib
You asked and we listened... @workshopmlsb.bsky.social is excited to be expanding to Copenhagen, DK at @euripsconf.bsky.social 🎉
Two workshops (San Diego & Copenhagen) will run concurrently to support broader attendance. You can indicate your location preference(s) in the submission portal💫
Patrick Kidger
Brought to you by Machine Learning in Structural Biology (MLSB) at EurIPS 2025!
Join Cradle and Adaptyv Bio for drinks and conversation at the intersection of…
🚨To accommodate the addition of EuroMLSB, we have extended the submission deadline to October 1, 2025 11:59pm AoE.
Find information on paper guidelines at mlsb.io. Submissions will be made through CMT.
