IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models academic.oup.com/mbe/article/...
Very exciting news, congratulations! :)
See a brief review summarizing the use of synthetic microbial communities (SynComs) for revealing the ecology of specialized metabolites
[my holiday break writing exercise]
portlandpress.com/essaysbioche...
#MicrobiomeEcology at Institute of Biology Leiden (IBL)
We are excited to release the BAT!🦇🚨
We've used this phylogenetic analysis pipeline in our lab for years, and grad Ben Sheppard now presents a Github release and preprint.
I run BAT analyses almost daily. It makes exploring gene families routine, customizable, and fun🧵
A new preprint is OUT! 🚨
Thrilled to finally share our work on how decoy diversification underpins the regulation of an NLR-mediated autoimmunity.
Check out the full story on @bioRxiv: www.biorxiv.org/content/10.6...
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Abstract. IQ-TREE (https://iqtree.github.io/) is a widely used open-source software tool for efficiently inferring phylogenetic trees under maximum likelih
📢 EffectorGeneP is finally here! Stop missing small, single-exon or orphan genes from your favourite pathogen genome. Current tools only annotate 15%-78% of effector genes, EffectorGeneP finds 95% - including the large AvrSr26 family in stem rust. #Bioinformatics 📖 www.biorxiv.org/content/10.6...
Andrew Roger
So proud to see this story finally out!🎉 We added new data since our previous preprint—transgenic barley plants with an engineered immune receptor that fights off two fungal pathogens at once. Short 🧵 and link to the original preprint thread on X👇
www.science.org/doi/10.1126/...
Our paper on the YprA family of helicases and their roles in bacterial defence is now out!
We describe ARMADA, a defence system synergise with Druantia and show that both systems spread horizontally on a novel type of mobile genetic element that we call SPIDERs
www.sciencedirect.com/science/arti...
🌿🧬Bryophytes have a larger gene family space than vascular plants. New super pangenome analysis of 123 genomes reveals new immune receptors & microbial genes acquired through horizontal transfer
Small in size. Big in genetic toolkit #plantscience @natgenet.nature.com
www.nature.com/articles/s41...
Juan （胡安）
Ákos T Kovács
www.biorxiv.org
Ye Jin (Jennie) Ahn
Plants and animals respond to pathogen attack by mounting innate immune responses that require intracellular nucleotide-binding leucine-rich repeat (NLR) proteins. These immune receptors detect pathog...
Bacteria and archaea possess an enormous variety of antiviral immune systems that often share homologous proteins and domains. YprA-family helicases a…
📢 PDRA Position - Plant Immune Receptor Bioengineering at Imperial College London
🌱 Start: Aug 2026 (flexible)
🧪 Wet lab + bioinformatics
📅 Up to 3 years (ERC-funded)
📍 South Kensington, on site
ℹ️ shorturl.at/VIITk
🔗 kourelislab.com
#PlantImmunity #PlantPathology
🙏 Share with interested candidates!
Please note that job descriptions are not exhaustive, and you may be asked to take on additional duties that align with the key responsibilities ment...
Excited to share that I will start my lab this summer as an ECL Unit Leader at RIKEN CSRS!
We will study perception by cell-surface receptors across diverse plant species.
I’ll be recruiting soon, so please reach out if you’re interested!
A super-pangenome analysis incorporating 123 newly sequenced bryophyte genomes reveals that bryophytes exhibit a larger number of unique and lineage-specific gene families than vascular plants.
