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Now in JCIM: pubs.acs.org/doi/full/10....
11mo
CACHE4 results are out! All previously known CBLCB ligands shared the same scaffold. Congrats to Keunwan Park who successfully designed a chemically novel series, to the experimental team at @thesgc.bsky.social and thanks to @conscience-network.bsky.social for greasing the wheels! bit.ly/4mYNe3r
CACHE 7 is launched with support from the @gatesfoundation.bsky.social and unpublished data from Damian Young at @bcmhouston.bsky.social, Tim Willson @thesgc.bsky.social and Neelagandan Kamaria InSTEM. Design selective PGK2 inhibitors. We'll test them experimentally. bit.ly/4lnVYOs
Jun 16, 2025
Matthieu Schapira
AbstractA critical assessment of computational hit-finding experiments (CACHE) challenge was conducted to predict ligands for the SARS-CoV-2 Nsp13 helicase RNA binding site, a highly conserved COVID-1...
pubs.acs.org
CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13
10mo
New @chemrxiv.bsky.social preprint! RoboChem-Flex is a powerful, low-cost (<5k EUR), modular self-driving lab for chemical synthesis We showcase 6 studies (photochemistry, biocatalysis, cross coupling, ee ...), all optimized with different configurations & ML πŸ”— chemrxiv.org/engage/chemr...
1/4 πŸš€ Announcing the 2025 Protein Engineering Tournament. This year’s challenge: design PETase enzymes, which degrade the type of plastic in bottles. Can AI-guided protein design help solve the climate crisis? Let’s find out! ⬇️ #AIforBiology #ClimateTech #ProteinEngineering #OpenScience
Matthieu Schapira
11mo
πŸš€ After two+ years of intense research, we’re thrilled to introduce Skala β€” a scalable deep learning density functional that hits chemical accuracy on atomization energies and matches hybrid-level accuracy on main group chemistry β€” all at the cost of semi-local DFT βš›οΈπŸ”₯πŸ§ͺ🧬
11mo
Matthieu Schapira
11mo
New Practical Cheminformatics Post patwalters.github.io/Three-Papers...
The CACHE #2 preprint is now online: bit.ly/3DyCmHN Active learning and fragment growing delivered confirmed hits. A citizen scientist using the Fold-it gaming interface designed the top compound! Kudos to Sasha and Madhushika @thesgc.bsky.social at the bench. @conscience-network.bsky.social
Closing the loop on #GenAI for #GPCR #SBDD www.nature.com/articles/s41... tinyurl.com/yeyhfr7j
What if, instead of trying to predict properties of every molecule, we focus on simply ranking them? After all, when running Bayesian optimization (BO) for drug/materials discovery, what matters is picking the best candidates first. Paper: doi.org/10.1063/5.02... Code: github.com/gkwt/rbo [1/5]
This week's cover of @rsc.org @chemicalscience.rsc.org AIMNet2: a neural network potential to meet your neutral, charged, organic, and elemental-organic needs. pubs.rsc.org/en/content/a... #compchem #chemsky
10mo
Mar 10, 2025
11mo
Noel Research Group
9mo
The Align Foundation
Jun 11, 2025
Jan Hermann
Here the authors combine a deep generative model with structure-based drug design and prospectively validate functionally active, nanomolar, A2A adenosine receptor ligands and solve their crystal stru...
www.nature.com
Identification of nanomolar adenosine A2A receptor ligands using reinforcement learning and structure-based drug design - Nature Communications
Matthieu Schapira
Chris de Graaf
The Matter Lab
Pat Walters
Olexandr Isayev πŸ‡ΊπŸ‡¦ πŸ‡ΊπŸ‡Έ